PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g15940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 973aa MW: 106654 Da PI: 4.8876 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.2 | 6.4e-53 | 32 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l+pGfrFhPtdeelv +yLk+kv+gk++++ ++i+evdiy++ePwdL +++k++++ewyfFs dkky +g r nrat++gyWkatg+d++v Vradi08g15940.1 32 LAPGFRFHPTDEELVIYYLKRKVSGKSFRF-DAISEVDIYRSEPWDLAdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATNKGYWKATGNDRPV 124 579**************************9.99**************75348899999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++++vglkktLvf++grap+g++t+Wvmheyrl Vradi08g15940.1 125 KH-DQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 159 **.999****************************98 PP | |||||||
2 | NAM | 81.6 | 1.7e-25 | 467 | 539 | 47 | 122 |
NAM 47 LpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWv 122 Lp +k+++ ewyfFs d+ky +g+r+nrat++gyWk+tgkd++v + ++++vg+kktLv++ grap+g++t+W Vradi08g15940.1 467 LP--LKTKDLEWYFFSVLDRKYGNGSRTNRATEKGYWKTTGKDRPVAH-GDRTVGMKKTLVYHIGRAPHGRRTNWN 539 44..456788**************************************.999***********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-60 | 27 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.504 | 32 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-27 | 34 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.134 | 419 | 560 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-9 | 458 | 539 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.15E-27 | 470 | 548 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 973 aa Download sequence Send to blast |
MGRETVFLPA PPTTTTTIVN PVAAPTAPPT SLAPGFRFHP TDEELVIYYL KRKVSGKSFR 60 FDAISEVDIY RSEPWDLADK SRLKTRDQEW YFFSALDKKY GNGGRMNRAT NKGYWKATGN 120 DRPVKHDQRT VGLKKTLVFH SGRAPDGKRT NWVMHEYRLV DEELERAGTG SSQPQDAYVL 180 CRVFHKNNIG PPNGQRYAPF VEEEWDDASG MVPGAEPVHN GSIAHQPRVE GNNGVLCAEG 240 RNGVLQDTQS INKTPFDVNK LPIETQNLLA VCKRESMAEY PSPEKDDNNC KQVDEYPSPQ 300 TDNPKPFSLI YKRRRHNLNS NHSNVSGDSI RTGQDPCSST ITTAATTLPT TTAGADTTNS 360 APKKHFLSAL VEFSLQESLE SKESLALIKA PDFDAENLES SMSPSSAKFI KNLQNEIHKL 420 AVEKETMSDS SLLNPIHGTY GSRLPIPPHR RRAGGVLPEA QDHRKPLPLK TKDLEWYFFS 480 VLDRKYGNGS RTNRATEKGY WKTTGKDRPV AHGDRTVGMK KTLVYHIGRA PHGRRTNWNG 540 AKYGAPLDEK EWDVDEENEQ KEVVPVPATA HRVVAPLTEI SPNVVAPPLP ATAAVAPPVV 600 ATGGDFWDDI GAFLETNDLD GELDLTDMIG GVTFPSLNFH HGECSTYAEN SQELIKDQEP 660 LAGTFGISGP ENGQPLDMAE QLDMGTGSVK DEENGEQSEI VNLLNFNDAS DNMDLDLYFD 720 ATQNLPMADD ESFLETNDLA IGNEGDLIEA DPYANDIMLD KYLALPDDDD DICKYISFDY 780 SQVPESENSN SNQGSPLTQQ TVGGETSNKA VVGKHDSEAQ TSNEAFSVQN TEEAKLAAPG 840 NTNPFVKQAY GWLASIPASP AHAFEFPAKD ITLGVDGAAQ SSHPAHITTG MISITDITFR 900 GNAMDWPMGK IGGFNTAMST EFSRPDVNCA ALIPVSGKTA FVLSHGWIFL TGFSVLILSL 960 SFKIGSIMYT GK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-46 | 31 | 538 | 14 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g15940.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014514424.1 | 0.0 | NAC domain-containing protein 53 isoform X1 | ||||
Swissprot | Q9SQY0 | 1e-107 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A4D6N3C2 | 0.0 | A0A4D6N3C2_VIGUN; Uncharacterized protein | ||||
STRING | XP_007144249.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8189 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 4e-96 | NAC domain containing protein 50 |
Publications ? help Back to Top | |||
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