PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g15940.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 973aa    MW: 106654 Da    PI: 4.8876
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g15940.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.4e-53321591128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      l+pGfrFhPtdeelv +yLk+kv+gk++++ ++i+evdiy++ePwdL   +++k++++ewyfFs  dkky +g r nrat++gyWkatg+d++v
  Vradi08g15940.1  32 LAPGFRFHPTDEELVIYYLKRKVSGKSFRF-DAISEVDIYRSEPWDLAdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATNKGYWKATGNDRPV 124
                      579**************************9.99**************75348899999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ ++++vglkktLvf++grap+g++t+Wvmheyrl
  Vradi08g15940.1 125 KH-DQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 159
                      **.999****************************98 PP
2NAM81.61.7e-2546753947122
              NAM  47 LpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWv 122
                      Lp  +k+++ ewyfFs  d+ky +g+r+nrat++gyWk+tgkd++v + ++++vg+kktLv++ grap+g++t+W 
  Vradi08g15940.1 467 LP--LKTKDLEWYFFSVLDRKYGNGSRTNRATEKGYWKTTGKDRPVAH-GDRTVGMKKTLVYHIGRAPHGRRTNWN 539
                      44..456788**************************************.999***********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-6027187IPR003441NAC domain
PROSITE profilePS5100558.50432186IPR003441NAC domain
PfamPF023653.8E-2734159IPR003441NAC domain
PROSITE profilePS5100524.134419560IPR003441NAC domain
PfamPF023651.4E-9458539IPR003441NAC domain
SuperFamilySSF1019419.15E-27470548IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 973 aa     Download sequence    Send to blast
MGRETVFLPA PPTTTTTIVN PVAAPTAPPT SLAPGFRFHP TDEELVIYYL KRKVSGKSFR  60
FDAISEVDIY RSEPWDLADK SRLKTRDQEW YFFSALDKKY GNGGRMNRAT NKGYWKATGN  120
DRPVKHDQRT VGLKKTLVFH SGRAPDGKRT NWVMHEYRLV DEELERAGTG SSQPQDAYVL  180
CRVFHKNNIG PPNGQRYAPF VEEEWDDASG MVPGAEPVHN GSIAHQPRVE GNNGVLCAEG  240
RNGVLQDTQS INKTPFDVNK LPIETQNLLA VCKRESMAEY PSPEKDDNNC KQVDEYPSPQ  300
TDNPKPFSLI YKRRRHNLNS NHSNVSGDSI RTGQDPCSST ITTAATTLPT TTAGADTTNS  360
APKKHFLSAL VEFSLQESLE SKESLALIKA PDFDAENLES SMSPSSAKFI KNLQNEIHKL  420
AVEKETMSDS SLLNPIHGTY GSRLPIPPHR RRAGGVLPEA QDHRKPLPLK TKDLEWYFFS  480
VLDRKYGNGS RTNRATEKGY WKTTGKDRPV AHGDRTVGMK KTLVYHIGRA PHGRRTNWNG  540
AKYGAPLDEK EWDVDEENEQ KEVVPVPATA HRVVAPLTEI SPNVVAPPLP ATAAVAPPVV  600
ATGGDFWDDI GAFLETNDLD GELDLTDMIG GVTFPSLNFH HGECSTYAEN SQELIKDQEP  660
LAGTFGISGP ENGQPLDMAE QLDMGTGSVK DEENGEQSEI VNLLNFNDAS DNMDLDLYFD  720
ATQNLPMADD ESFLETNDLA IGNEGDLIEA DPYANDIMLD KYLALPDDDD DICKYISFDY  780
SQVPESENSN SNQGSPLTQQ TVGGETSNKA VVGKHDSEAQ TSNEAFSVQN TEEAKLAAPG  840
NTNPFVKQAY GWLASIPASP AHAFEFPAKD ITLGVDGAAQ SSHPAHITTG MISITDITFR  900
GNAMDWPMGK IGGFNTAMST EFSRPDVNCA ALIPVSGKTA FVLSHGWIFL TGFSVLILSL  960
SFKIGSIMYT GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-463153814170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g15940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514424.10.0NAC domain-containing protein 53 isoform X1
SwissprotQ9SQY01e-107NAC52_ARATH; NAC domain containing protein 52
TrEMBLA0A4D6N3C20.0A0A4D6N3C2_VIGUN; Uncharacterized protein
STRINGXP_007144249.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81893241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.14e-96NAC domain containing protein 50
Publications ? help Back to Top
  1. Higgins JD,Ferdous M,Osman K,Franklin FC
    The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
    Plant J., 2011. 65(3): p. 492-502
    [PMID:21265901]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]
  4. Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
    sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
    Plant J., 2017. 90(3): p. 505-519
    [PMID:28207953]
  5. Elmayan T, et al.
    Arabidopsis mutants impaired in cosuppression.
    Plant Cell, 1998. 10(10): p. 1747-58
    [PMID:9761800]