PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g15920.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 197aa    MW: 21618.3 Da    PI: 9.1958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g15920.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000395274123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C+++F++   L  H  +H
  Vradi08g15920.1 52 YECKTCNRTFPSFQALGGHRASH 74
                     99**********99999998887 PP
2zf-C2H214.10.00014127149123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F++   L  H+r+H
  Vradi08g15920.1 127 HECSICGAEFTSGQALGGHMRRH 149
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-135176IPR007087Zinc finger, C2H2
SuperFamilySSF576674.19E-95174No hitNo description
PROSITE profilePS5015710.6375279IPR007087Zinc finger, C2H2
SMARTSM003550.0525274IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SuperFamilySSF576674.19E-9122149No hitNo description
Gene3DG3DSA:3.30.160.606.6E-4125149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-13126151IPR007087Zinc finger, C2H2
SMARTSM003550.01127149IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723127149IPR007087Zinc finger, C2H2
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MANCLILLAQ GQSRESPKHV EEDVGMNYAK YSSRKFLEAA TLGSSRAGYY VYECKTCNRT  60
FPSFQALGGH RASHKKPKAI LPIAQDKKHQ HLLSSDEDDF QFKPNNKSSF SLQLGTKPNL  120
YNKSKVHECS ICGAEFTSGQ ALGGHMRRHR APVGIPTTLS FTPLALEPEE DHPRKKRNVA  180
VENGDSNNGG SSDVVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g15920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512481.11e-132zinc finger protein ZAT9
TrEMBLA0A1S3V2A61e-131A0A1S3V2A6_VIGRR; zinc finger protein ZAT9
STRINGXP_007144239.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-46C2H2 family protein