PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi08g15530.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NF-YB

Protein Properties

Length: 172aa MW: 18679.9 Da PI: 6.5176

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi08g15530.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	176.5	2.5e-55	26	119	2	95
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 reqdrflPian+srimkk lP n+ki+kdak+t+qecvsefisfvtseas+kcq+ekrktingddllwa+atlGfedy+eplkvyl++yre ++ Vradi08g15530.1 26 REQDRFLPIANISRIMKKGLPPNGKIAKDAKDTMQECVSEFISFVTSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREGDT 119 89****************************************************************************************9665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.0E-52	23	122	IPR009072	Histone-fold
SuperFamily	SSF47113	1.35E-39	28	124	IPR009072	Histone-fold
Pfam	PF00808	5.5E-29	31	95	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.7E-21	59	77	No hit	No description
PROSITE pattern	PS00685	0	62	78	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.7E-21	78	96	No hit	No description
PRINTS	PR00615	1.7E-21	97	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MSDAPASPSH ESGGEQSPRA FSSGAREQDR FLPIANISRI MKKGLPPNGK IAKDAKDTMQ 60 ECVSEFISFV TSEASEKCQK EKRKTINGDD LLWAMATLGF EDYIEPLKVY LARYREGDTK 120 GSARGGDGSA RPDQVGLAGQ NSQLVHQGSL NYISLQVQPQ HLVIPSMQSH E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	5e-48	26	116	2	92	Transcription factor HapC (Eurofung)
4g92_B	5e-48	26	116	2	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi08g15530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ775529	1e-141	FJ775529.1 Glycine max CCAAT-binding transcription factor family protein (NF-YB1a) mRNA, complete cds.
GenBank	FJ775530	1e-141	FJ775530.1 Glycine max CCAAT-binding transcription factor family protein (NF-YB1b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014512284.1	1e-124	nuclear transcription factor Y subunit B-1 isoform X2
Refseq	XP_022641061.1	1e-124	nuclear transcription factor Y subunit B-1 isoform X2
Swissprot	Q8VYK4	6e-77	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A1S3V2A9	1e-123	A0A1S3V2A9_VIGRR; nuclear transcription factor Y subunit B-1 isoform X2
STRING	XP_007144163.1	1e-120	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2545	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	3e-79	nuclear factor Y, subunit B8

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]