PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g14940.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 182aa    MW: 20521.5 Da    PI: 6.8569
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g14940.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000143254123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ F++   L  H++ H
  Vradi08g14940.1 32 YECTFCKRGFTNAQALGGHMNIH 54
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.4E-52958IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.36E-72958No hitNo description
SMARTSM003550.00973254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4683259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MNSEKPVSPE NLSDENDQEE AQDDTGGTKR SYECTFCKRG FTNAQALGGH MNIHRKDRAK  60
AKQFTLDASP SINKFNGHQS IVFPFVSEAL NQQHARPNYS VLESQRNCDK HFRPPPPASA  120
FYYEFYEPRS RSLSLNQELR GANLSLQIGP SHHVGDDIHQ ARGNQKDSEV DLELRLGHHP  180
Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g14940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511864.11e-134transcriptional regulator TAC1-like
TrEMBLA0A1S3V1411e-133A0A1S3V141_VIGRR; transcriptional regulator TAC1-like
STRINGXP_007144064.11e-106(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-17C2H2 family protein