PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g14110.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 788aa    MW: 87700.4 Da    PI: 4.5679
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g14110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.000116016381355
                      HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R++i +++ eLr ++P+      +K s  + L ++++Y+  Lq
  Vradi08g14110.1 601 RQQIQDCIKELRGIIPNG-----GKCSIDSLLDLTIRYMLFLQ 638
                      89**************98.....7999999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-7544IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142151.0E-1453142IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.242588637IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-6601643IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00243601642No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MSLTLRNKLK TLCSSVDAWS YAIFWRFHPR NSLLLTVEEA YYEEHLGEEI ADMHPQVHLL  60
GEGIVGEAAF TGKHSWVHSD GQTHYWNPTG QNICEDDSCM HQQFSSGIKT IVVIPVKALG  120
VVQFGSRNKI LERVEFLEQT QSMLTEIDDD MGMFDMSENA VLPLDCENND LNGMLASISS  180
ASPNDPFPSH YKNYEEALAS FQGDSSYLGD QLKGTTEAQV VWSDRNSIDV LLKPNSSTDN  240
FIAKTPYLGV CDGELSSFDL LEQLLVSSVR PQDVADACLM NGNASSTSKL PFCSMDRGSF  300
QGKLQNSLDN QYSNQSSVVT DVDFSSTSYA LHGHSESIEP VDMSEEILKF SSMDDLCHWF  360
GPSSEDSICK AAIMDNKFSE STEFNPTSFD LVGSSSLNDV LVTGLAGYNS NSDGNETSVV  420
MQNTEKGPLD FMEIDFSYEQ ANEWWGNTLT PVVSGVTDTG FSESISELIS DTLPGTRKRL  480
FSELGIEELL RGGANYYPVN SSEFDCGLSP NKRQTVECSS VNGSTRAELM QPLCDLDSTN  540
NLPSKKDTFS KLQAATWIDD SHSINIRKAV PKHPQKPEEH AKPTKKRARP GESPRPRPKD  600
RQQIQDCIKE LRGIIPNGGK CSIDSLLDLT IRYMLFLQSV LKYSDKLREP NEPKENEVVL  660
KDSDVADSKN CGITWAYEVG HETMLCPIIV EDMSPPGQML IEMLCEVQGI FLEIIDIIRG  720
FGLNILKAKM ERKKNKLWAR FIVEANRHVT RIDVFWSLIH LLQQTNTSGI DSSNKNWDAL  780
HANSIKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g14110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512590.10.0transcription factor bHLH157
TrEMBLA0A1S3V2R60.0A0A1S3V2R6_VIGRR; transcription factor bHLH157
STRINGXP_007161572.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69551621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-43conserved peptide upstream open reading frame 7