PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g13250.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 274aa    MW: 29607 Da    PI: 7.217
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g13250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.11.1e-14761241058
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                      + +NRe+ArrsR+RK+a +  Le+ v +L +eN++L k+l   ++++++
  Vradi08g13250.1  76 MLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSE 124
                      579***********************************99999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.0E-1076131IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.7E-1176123No hitNo description
PfamPF001704.6E-1276123IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-1076121No hitNo description
PROSITE profilePS502179.49679124IPR004827Basic-leucine zipper domain
CDDcd147021.28E-685123No hitNo description
PfamPF124981.5E-46138262IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MPSIPSTQKK PVVAVRPSTS GSSRELSDDD DAEGETSMND MDPADAKRVR RWRCSSSFGL  60
GLLGYLAYEG ISFAGMLSNR ESARRSRRRK QAHLTDLETQ VSQLRGENST LLKRLTDVSQ  120
KYSESAVDNR VLKADVETLR AKVKMAEETV KRITGLNPMV HAMSDMSSLG MTLFDGRSPS  180
DTSADAAVPV QDDHHHFYQP TSNNPIPSHD PIVNDGLAGM SSIENVQQNP AAVAGGNKMG  240
QTASLQRVAS LEHLQKRIRG GVDSCGPPSN GEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18390RRSRRRKQ
28590SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g13250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2466650.0AB246665.1 Glycine max SBZ1 mRNA for bZIP protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514296.11e-164light-inducible protein CPRF2
SwissprotQ990903e-74CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A1S3V7H61e-163A0A1S3V7H6_VIGRR; light-inducible protein CPRF2
STRINGXP_007144827.11e-152(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41763358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.13e-46bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]