PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g13180.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 591aa    MW: 67750.5 Da    PI: 7.4994
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g13180.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.89.1e-16101175286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      Wt++evl L+++r++me+++ +       We+vs+k++e g++rs+++Ckek+e+ ++++ +  +  k++     ++++++++le
  Vradi08g13180.1 101 WTNDEVLSLLRIRSSMESWFPEL-----TWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNNINYGKNN-----NNYRFLSELE 175
                      ********************987.....9*******************************8765555542.....3566666665 PP
2trihelix93.61.9e-29429518186
         trihelix   1 rWtkqevlaLiearr.emeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+k+evlaLi++r  ++ +++++++     k plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  Vradi08g13180.1 429 RWPKDEVLALINLRCsSVSNNSSSNEekegNKVPLWERISQGMSELGYRRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 518
                      8************96334444443223455999******************************************8.9999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-11100177No hitNo description
PROSITE profilePS500906.365100152IPR017877Myb-like domain
PfamPF138372.9E-19428519No hitNo description
CDDcd122033.88E-22428498No hitNo description
PROSITE profilePS500906.272429491IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MFDGVPEQFH QFITPRTSLP LHLPFPLHAS ANPNTTFPSN FDPYNPHHHQ LPLQPTTLLH  60
PLHHPPHPTH KDEQHKEQNT AVALPMNFQI QRDQRHLIHP WTNDEVLSLL RIRSSMESWF  120
PELTWEHVSR KLAELGYKRS AEKCKEKFEE ESRYFNNNIN YGKNNNNYRF LSELEQLYHQ  180
GGADHLATQE KTHQLHKQDK MDHHPLEEGD SGKLDPPLTK QNHDAAAVEK NQGRKRKRPG  240
RFEMFKGFCE SIVHKMMAQQ EEMHNKLLED MMKRDEEKFT REEAWKKQEM EKMNKELEMM  300
AREQAIAGDR QTNIIQILNK FSVTPASNKS LKVVTNGSNL KSHISQNPNP SQNIPATPAT  360
ENPTSSVAQD TLQLITNPST SSSSAQVPQP NPSSSSLNSQ NNINPIERNS VLNKSLSSNV  420
GEKDDVGRRW PKDEVLALIN LRCSSVSNNS SSNEEKEGNK VPLWERISQG MSELGYRRSA  480
KRCKEKWENI NKYFRKTKDV NKKRSLDSRT CPYFHQLSSL YNEGKLVLQS ERPESHTDNQ  540
AENLEQVQAD QTRAESSSQV GSGGFSVQQQ VDHGGEKTLM QVPSLDFDQF *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g13180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514854.10.0trihelix transcription factor GTL2
TrEMBLA0A1S3V9N50.0A0A1S3V9N5_VIGRR; trihelix transcription factor GTL2
STRINGXP_007144820.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.13e-39Trihelix family protein