PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi08g12530.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 1156aa MW: 129117 Da PI: 9.047

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi08g12530.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.2	5.2e-10	51	87	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e++++a +++G++ Wk++a + +Rt +++ Vradi08g12530.1 51 QWSKEELERFYEAYRMYGKD-WKKVAGVVR-NRTTEMVE 87 6***************99.*****.*99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.89E-11	46	95	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.094	47	100	IPR017884	SANT domain
SMART	SM00717	4.7E-5	48	96	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-5	50	91	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-8	51	91	IPR001005	SANT/Myb domain
CDD	cd00167	5.93E-6	52	86	No hit	No description
SMART	SM01135	9.2E-53	654	755	IPR033471	DIRP domain
Pfam	PF06584	3.6E-30	654	754	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1156 aa Download sequence Send to blast
MRAGSMAPTR KSRSVNKRIS SSNDVSPEKD GVNSNKNKQR KKKLTDKLGS QWSKEELERF 60 YEAYRMYGKD WKKVAGVVRN RTTEMVEALY NMNRAYLSLP EGTASVVGLI AMMTDHYNVL 120 EESDSEMESN DALGSRKFVK RKREKVQLSV SKDQSHSIAA SDGCLSLLKK RRLDGIVPHA 180 VGKRTPRVPV SYSYKKDYTE NYVSPYRRSL KSTTDANDDE VAHVVALALT EAAQRGGSPQ 240 VSQSTCRRAE PKPSPVLRWE RKQQLSETAR AKLHNLSVDE ELLDGSIESR GADNGEYARD 300 NSSLMDMEGT GTVEVLQKGG KFYRKKERVK NVGNHQLDDG GEACSGTEEG LSCSLKEMVD 360 IEVTNEKLEK ISPKGGRKRN KKLFFGGNSV TRHVCNICAT FSSLPLLALG QDETPALNAL 420 QTLADLSLMM PISTIDSESS IQLKGDRISA DKDSKSALPE ETLTSHKRHK LKHSVVPEIE 480 VSTSKKSKLG KESTKDTNVL SESKEQLPFA DTTWKRKRKS VVSKVANAKL DSCPSGPLKD 540 EALDDEKKPV VKGKHGDQVF TLPKQLKTVK SSESSLCIDQ KETVPTEIPL LNEVSLPTKR 600 SRRKMNLQRT SSAKQKSSDF ILKSQANKHT DLKEKLSSCL SSNMVRRWFI FEWFYSAIDY 660 PWFAKRELME YLNHVGLGNI PRLTRVEWSV VRGSLGKPRR LSEHFLHDER QKLAEYRESV 720 RKHYAELRTG IRDGLPTDLA RPLCVGQRVI AIHPKTREIH DGSVLTVDYD KCRIQFDRPE 780 LGVEFVMDID CMPFNPLDNM PEALRRHIDD RKGSFIPIEP HINGNSNFGG CENHSSPLKV 840 HTSSSALVMH GKATVATMDN FCAQAGCVQP CKVTHHQARE ADIHALSELK RALDKKETLL 900 MELRSSNSDI LENQNGIECL NDSEVFKKHY ATVSDAMLQL RQRNTYRGNS LPPWMKPQTG 960 FSVHDDLPSM LDGSLTQELG STVVQIIKGS RSRAHAMVDA AFKALSLTKE GEDAFVKIGQ 1020 ALDSINHQQL ASKSRLPVIR SQEQVNTNGS FCHVNNSTCS VSESIINDPS GAKVHNYSDK 1080 FDTELPSDLI TSCVATLIMI QTCTERQYPP ADVAQILDSA VSSLHPCCPQ NLPIYREIQM 1140 CMGRIKTQIL ALIPT*

Sequence ? help Back to Top

Protein Sequence Length: 1156 aa Download sequence Send to blast

MRAGSMAPTR KSRSVNKRIS SSNDVSPEKD GVNSNKNKQR KKKLTDKLGS QWSKEELERF  60
YEAYRMYGKD WKKVAGVVRN RTTEMVEALY NMNRAYLSLP EGTASVVGLI AMMTDHYNVL  120
EESDSEMESN DALGSRKFVK RKREKVQLSV SKDQSHSIAA SDGCLSLLKK RRLDGIVPHA  180
VGKRTPRVPV SYSYKKDYTE NYVSPYRRSL KSTTDANDDE VAHVVALALT EAAQRGGSPQ  240
VSQSTCRRAE PKPSPVLRWE RKQQLSETAR AKLHNLSVDE ELLDGSIESR GADNGEYARD  300
NSSLMDMEGT GTVEVLQKGG KFYRKKERVK NVGNHQLDDG GEACSGTEEG LSCSLKEMVD  360
IEVTNEKLEK ISPKGGRKRN KKLFFGGNSV TRHVCNICAT FSSLPLLALG QDETPALNAL  420
QTLADLSLMM PISTIDSESS IQLKGDRISA DKDSKSALPE ETLTSHKRHK LKHSVVPEIE  480
VSTSKKSKLG KESTKDTNVL SESKEQLPFA DTTWKRKRKS VVSKVANAKL DSCPSGPLKD  540
EALDDEKKPV VKGKHGDQVF TLPKQLKTVK SSESSLCIDQ KETVPTEIPL LNEVSLPTKR  600
SRRKMNLQRT SSAKQKSSDF ILKSQANKHT DLKEKLSSCL SSNMVRRWFI FEWFYSAIDY  660
PWFAKRELME YLNHVGLGNI PRLTRVEWSV VRGSLGKPRR LSEHFLHDER QKLAEYRESV  720
RKHYAELRTG IRDGLPTDLA RPLCVGQRVI AIHPKTREIH DGSVLTVDYD KCRIQFDRPE  780
LGVEFVMDID CMPFNPLDNM PEALRRHIDD RKGSFIPIEP HINGNSNFGG CENHSSPLKV  840
HTSSSALVMH GKATVATMDN FCAQAGCVQP CKVTHHQARE ADIHALSELK RALDKKETLL  900
MELRSSNSDI LENQNGIECL NDSEVFKKHY ATVSDAMLQL RQRNTYRGNS LPPWMKPQTG  960
FSVHDDLPSM LDGSLTQELG STVVQIIKGS RSRAHAMVDA AFKALSLTKE GEDAFVKIGQ  1020
ALDSINHQQL ASKSRLPVIR SQEQVNTNGS FCHVNNSTCS VSESIINDPS GAKVHNYSDK  1080
FDTELPSDLI TSCVATLIMI QTCTERQYPP ADVAQILDSA VSSLHPCCPQ NLPIYREIQM  1140
CMGRIKTQIL ALIPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	375	382	GRKRNKKL
2	597	604	TKRSRRKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi08g12530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022640907.1	0.0	protein ALWAYS EARLY 1 isoform X4
TrEMBL	A0A3Q0FEX3	0.0	A0A3Q0FEX3_VIGRR; protein ALWAYS EARLY 1 isoform X4
STRING	XP_007144725.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding