PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g12470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 398aa MW: 43320.7 Da PI: 9.3798 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.3e-05 | 91 | 113 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Vradi08g12470.1 91 FICEICNKGFQRDQNLQLHRRGH 113 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00085 | 167 | 189 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Vradi08g12470.1 167 WKCDKCSKKYAVQSDWKAHSKIC 189 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-5 | 90 | 113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.26E-7 | 90 | 113 | No hit | No description |
PROSITE profile | PS50157 | 10.845 | 91 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 4.5E-5 | 91 | 113 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 132 | 162 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.9E-4 | 155 | 188 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.26E-7 | 162 | 187 | No hit | No description |
SMART | SM00355 | 150 | 167 | 187 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MSNITSCDSG SFSTENTRED AAVKQQPEIL AQFHSPHSLT STTTTNNSNA SNTNSQPPAP 60 VKKKRSLPGN PDPSAEVIAL SPNTLMATNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK 120 QRTSTEVRKR VYVCPEPSCV HHNPARALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS 180 DWKAHSKICG TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKGNEGQL PKIGTNLQCQ 240 QIPNLVSSLP INTNVVPNPQ QIGGTSEFNH AEHKHPLSLP HELMPMPAPK PFNSNTTMAG 300 TVFSRSLSST SSPSLQLSSN IFEENGLHLA AGSQHIISAQ YNGFGGNGMS GGSVGMNGVD 360 MFNAILDQSK ALSKIIEQSN RSSSGGATNG GLEKLVK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-34 | 163 | 221 | 3 | 61 | Zinc finger protein JACKDAW |
5b3h_F | 3e-34 | 163 | 221 | 3 | 61 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g12470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144938.1 | 0.0 | hypothetical protein PHAVU_007G196100g | ||||
Swissprot | Q9SCQ6 | 1e-112 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | V7BGH7 | 0.0 | V7BGH7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007144938.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-102 | C2H2 family protein |
Publications ? help Back to Top | |||
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