PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g10430.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 300aa    MW: 33733.4 Da    PI: 5.024
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g10430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-1974122355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Vradi08g10430.1  74 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 122
                      9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.77573130IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2273131IPR016177DNA-binding domain
SMARTSM003803.1E-3873136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3273131IPR001471AP2/ERF domain
PfamPF008476.0E-1274122IPR001471AP2/ERF domain
CDDcd000185.54E-3374131No hitNo description
PRINTSPR003677.6E-127485IPR001471AP2/ERF domain
PRINTSPR003677.6E-1296112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MCGGAIIADF IPRRGRSLAA SELWPNSFGK DDDFGFGYSQ VANQQPSTVK TAQPPKVSEK  60
VDTKPVKRQR KNLYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDREARKI  120
RGKKAKVNFP NEDDEYSIQA RNPIPPLPFA TQKPTPYQQQ YRCDLNNAPT DLNFEFGYDL  180
NHTGAFSSHV DSVNAESVVA SGDENSGLAS GSEGAHSTNE FMGCSEKVNG YFNGTVIEKE  240
KEIEVIEAEE EKNKLQELSE ELMAYENYMK FYQIPYYDGQ SMPPNNVQES VVGDLWSFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2274130360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-21741321574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g10430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512560.10.0ethylene-responsive transcription factor RAP2-3 isoform X1
TrEMBLA0A1S3V2N60.0A0A1S3V2N6_VIGRR; ethylene-responsive transcription factor RAP2-3 isoform X1
STRINGXP_007145186.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-38ethylene-responsive element binding protein