PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g09610.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 392aa    MW: 43600.9 Da    PI: 4.9096
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g09610.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.8e-09257304355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++   +r+RR+ri + +  L ellP++        s a iL   ++Y+k+Lq
  Vradi08g09610.1 257 EKARVTDRQRRQRIADNLKALHELLPNP-----AEGSQAYILDDIIDYVKYLQ 304
                      6678899********************8.....589****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-11251314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-11253316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.525254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-6256304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-7259308No hitNo description
SMARTSM003536.1E-4260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEESSRSTRW DRRERLKSDG GVLGLQVMDR IRHPINLIGL DFGPMIKFYF PPLLSNFLVM  60
EEQSNEENPV QLTSCDNGGT ANDVSHSAEG HLIPNPKFFI AASSGRNESH WTCFPKPSHN  120
YVKYLSESST YLPNTSTDYM MGGSYLPVGS ITDGNVVNGS DRNFFYNDPG KVCAFKPIGS  180
SSNDLEIKKQ VGFWRADEGE EVIKVETESS QNFLYAESHP LWTADSLGDK HNALHDSMVM  240
VGAPASLPKS GSSSSKEKAR VTDRQRRQRI ADNLKALHEL LPNPAEGSQA YILDDIIDYV  300
KYLQLQIKEQ SGSRLQEEST GIPLVFHEGY GHYINQKMLN EPLEEIMGKL LEEHYAAAGQ  360
LLESKGLFLL PMALVDDLNE AMQTFGESAL V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g09610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511727.10.0transcription factor bHLH83-like isoform X2
TrEMBLA0A1S3V0L40.0A0A1S3V0L4_VIGRR; transcription factor bHLH83-like isoform X2
STRINGXP_007144615.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF121642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.17e-21LJRHL1-like 2