PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g09150.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 518aa    MW: 60080.1 Da    PI: 8.1742
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g09150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind95.55.6e-3021729515102
                      GTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind  15 lkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                      ++++isws++g+sfvv+d+++f+  +Lp+yFkhsnf+SFvRQLn+YgF+k++ ++         w+F+++ F +g+k+ll++i+r+k+
  Vradi08g09150.1 217 TNHVISWSRDGTSFVVWDPHTFSAILLPRYFKHSNFSSFVRQLNTYGFRKIDPDR---------WQFANEGFIRGHKHLLKSIRRRKT 295
                      689*************************************************999.........*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030041.5E-1017140IPR004252Probable transposase, Ptta/En/Spm, plant
SMARTSM004152.5E-39213293IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.26E-28217293IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-30217293IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.8E-27217293IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-9242254IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340243267IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-9255267IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MFKDARIARQ CPYWVREHVW NSIMAHWNSP QYRIKCATAK KNRASEKGGV LDTEGSITTH  60
EHAIHMVFTQ THLRKGTDTY VDERSHKTIV RRFFYEIDTC EIRGGSALDA NSRVDADDEI  120
IRTQCWVKAV GEKKKGQLYG AYDSLLARFD NLENLVKTLI PLQENNYNEK INARYRQPTT  180
FANPSSFALH YRGRFPLSNI DSFIPFGNTE GQKAIVTNHV ISWSRDGTSF VVWDPHTFSA  240
ILLPRYFKHS NFSSFVRQLN TYGFRKIDPD RWQFANEGFI RGHKHLLKSI RRRKTPSQLT  300
QSHSVEVGRF ELDKEVDRLK HDKIVLMMEL MNLRQQQQKA RMCIKEMEQR LQVTEFKQKH  360
MMAFLARAIK NPAFIHQLQK KEKRKDLEEA LTKKRRQIEQ GVRGIGESSS RGEGRSSVKV  420
EALEFAGCDC DFGVSELEKL AMEMQGCGKG RIDREVEEPE ALESQERLDR VLDEEFWEEL  480
MFSEKFDGRF DIPTAEDNDE DVVNILANEL GCLDSSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-1621729533122Heat shock factor protein 1
5d5u_B7e-1621729542131Heat shock factor protein 1
5d5v_B7e-1621729542131Heat shock factor protein 1
5d5v_D7e-1621729542131Heat shock factor protein 1
5hdg_A6e-1621729523112Heat shock factor protein 1
5hdn_A6e-1621729523112Heat shock factor protein 1
5hdn_B6e-1621729523112Heat shock factor protein 1
5hdn_C6e-1621729523112Heat shock factor protein 1
5hdn_D6e-1621729523112Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g09150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022640423.10.0heat stress transcription factor A-7a
TrEMBLA0A1S3V7G10.0A0A1S3V7G1_VIGRR; heat stress transcription factor A-7a
STRINGXP_007144664.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-86heat shock transcription factor A6B