PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g09140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 203aa MW: 22872.6 Da PI: 9.7779 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.4e-06 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Vradi08g09140.1 40 FVCEICNKGFQRDQNLQLHRRGH 62 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.8 | 0.00018 | 116 | 138 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Vradi08g09140.1 116 WKCEKCSKIYAVQSDWKAHSKTC 138 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.58E-7 | 39 | 62 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.1E-6 | 39 | 62 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 2.5E-5 | 40 | 62 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 40 | 62 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 170 | 81 | 111 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.9E-5 | 104 | 137 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.58E-7 | 111 | 136 | No hit | No description |
SMART | SM00355 | 170 | 116 | 136 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MFPSVMSNSN SLSEEATVSC DPDAEVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR 60 GHNLPWKLKQ RNNKEVKKKA YVCPEPSCVH HNPSRALGDL TGIKKHYCRK HGEKKWKCEK 120 CSKIYAVQSD WKAHSKTCGT REYRCDCGTL FSRGSLKKIW MIFALYGNGT KIDFTLVLNA 180 RAVVGCMKVD TAKIQVSICK SD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-22 | 112 | 153 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 6e-22 | 112 | 153 | 3 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g09140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017415647.1 | 1e-105 | PREDICTED: protein indeterminate-domain 12-like | ||||
Swissprot | Q9SCQ6 | 2e-89 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A0B2QC93 | 1e-105 | A0A0B2QC93_GLYSO; Zinc finger protein MAGPIE | ||||
TrEMBL | A0A0L9TWV6 | 1e-104 | A0A0L9TWV6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SRW8 | 1e-104 | A0A0S3SRW8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1R3I502 | 1e-104 | A0A1R3I502_COCAP; Uncharacterized protein | ||||
STRING | XP_007144666.1 | 1e-104 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 9e-92 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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