PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g08730.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 567aa    MW: 62042.4 Da    PI: 5.7767
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g08730.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11418464455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Vradi08g08730.1 418 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 464
                      799***********************66......*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-43113289IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.259414463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-13417468No hitNo description
SuperFamilySSF474592.22E-17417483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17418483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9418464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13420469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.37E-5498565No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MEIEGFVAAC TSRWVVKVVG LGFLWRRDND NEAVTAYGFR GSATVAMARV SCLMEIKEGG  60
RKMMGEKFCV NEEDKGVLES VLGAEAVAFF ISALSNNVFS SVVAPSVGAD STLRQRLCQL  120
VEGSKWNYAV FWQVAGLKSG GSALIWGDGH CSDPKGKRSS MGKDDEQEVR KMVLQKLDAC  180
FGGCVSKEAN YARLDRLSDL LMFYLSSMCY IFGFDSPCGP GSSFKSGKLI WTSDVAGCLN  240
QLESRSFLGK VAGLQTVVFV PLKSGVVELG SNEVVSEEQG FVEMVKTAFG ESSPGQTKVF  300
PKIFGHELSL GDTKSQSITI SFSPKVEDDP GFTSDSFEVQ GLGLNHAYGN SSNGTLGDSS  360
EGKMFPQLNQ MMGGNFNAQA RVPCLDLGNE DTSSIHADER KPRKRGRKPA NGREEPLNHV  420
EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAITFI TDLQMKIKVL EAEKNMINNK  480
DQRLSLPDMD FQEREDDTVV TVRCPLDTHP VSDVVKTFRE HQIVAQDTNV STTDDKIIHT  540
FSIRTEGGEA AAIQLKEKLE AALSKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-28412486276Transcription factor MYC2
5gnj_B4e-28412486276Transcription factor MYC2
5gnj_E4e-28412486276Transcription factor MYC2
5gnj_F4e-28412486276Transcription factor MYC2
5gnj_G4e-28412486276Transcription factor MYC2
5gnj_I4e-28412486276Transcription factor MYC2
5gnj_M4e-28412486276Transcription factor MYC2
5gnj_N4e-28412486276Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399407RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g08730.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514707.10.0transcription factor bHLH3
SwissprotA0A3Q7H2161e-178MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A1S3V9260.0A0A1S3V926_VIGRR; transcription factor bHLH3
STRINGXP_007144718.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-154bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]