PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g08620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 268aa    MW: 29862.8 Da    PI: 5.8314
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g08620.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000333254123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C  C++ F++   L  H++ H
  Vradi08g08620.1 32 YECVFCKRGFTTAQALGGHMNIH 54
                     99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.38E-63058No hitNo description
Gene3DG3DSA:3.30.160.605.5E-43058IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.993259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEFTCQEHSK TSSDEIDRSA EHNDEIGTAR SYECVFCKRG FTTAQALGGH MNIHRKDRAN  60
RAKPTFPSST STNLDDTNTY ADLALYSPSN PTYLSRGSYY STLPDSELDL NYNYYHHLYF  120
PSHASPAKSP SHLQYTELFC LENQRDPHLL FGQDWRQRDS FVKNSSSGTT VSATSTHIHL  180
SQPFQGLAPT VLPWQDLKSE SITTVDLVVL VTVGGATFAG SWEDVVSLEE SHGNEDHNTV  240
SSIKASIEKI PNDFKVNADF IVVCCRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g08620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-164AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511695.11e-115transcriptional regulator SUPERMAN-like
TrEMBLA0A1S3V0621e-114A0A1S3V062_VIGRR; transcriptional regulator SUPERMAN-like
STRINGXP_007144929.11e-92(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.16e-15C2H2 family protein