PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g08110.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 161aa    MW: 18250.2 Da    PI: 10.1795
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g08110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00163557123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  C++ Fs+   L  H ++H
  Vradi08g08110.1 35 FECRTCNRKFSSFQALGGHRSSH 57
                     89***********9999999988 PP
2zf-C2H214.30.0001280102123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg+ Fs    L  H+++H
  Vradi08g08110.1  80 HECSICGQKFSLGQALGGHMKRH 102
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-43353IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.0E-103559IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8033562IPR007087Zinc finger, C2H2
SuperFamilySSF576671.69E-835102No hitNo description
SMARTSM003550.443557IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-472102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.5E-980103IPR007087Zinc finger, C2H2
SMARTSM003550.0880102IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.55680102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MKRQREESVD LANCLVLLSH PTEIKPHKLF RPEEFECRTC NRKFSSFQAL GGHRSSHKAP  60
KQDLKEEEKI LRLGNETKKH ECSICGQKFS LGQALGGHMK RHRIALNEGF SSINQSLVKV  120
PILKRSNTTR VMCLDLNLTP LQNDLKLLFG DKAPRVDSFV *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g08110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511668.11e-115zinc finger protein ZAT11-like
SwissprotQ9SLD45e-43ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1S3UZZ51e-113A0A1S3UZZ5_VIGRR; zinc finger protein ZAT11-like
STRINGXP_007144472.15e-95(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-45C2H2 family protein