PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g08100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 142aa MW: 15772.2 Da PI: 10.2112 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00048 | 17 | 39 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Vradi08g08100.1 17 FQCKTCNRKFSSFQALGGHRASH 39 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.3 | 0.00012 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H Vradi08g08100.1 61 HECSICGQGFSLGQALGGHMRKH 83 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.9E-4 | 12 | 35 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.099 | 17 | 39 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.98E-9 | 17 | 83 | No hit | No description |
Pfam | PF13912 | 1.0E-10 | 17 | 41 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.263 | 17 | 44 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 19 | 39 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 59 | 83 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 7.5E-9 | 60 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 61 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MVAVLKRQRE KESQEEFQCK TCNRKFSSFQ ALGGHRASHK KPKLEGEEGK DLSLSRKPKT 60 HECSICGQGF SLGQALGGHM RKHRVGTNEG FSSVIAEAPL LKRWNSSKRV MCLELDLNLT 120 PLENDLKLLF GNKAPTVHLS L* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g08100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014512829.2 | 1e-100 | zinc finger protein ZAT11 | ||||
Swissprot | Q9SLD4 | 2e-41 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A1S3V3V6 | 2e-98 | A0A1S3V3V6_VIGRR; zinc finger protein ZAT11 | ||||
STRING | XP_007144473.1 | 5e-79 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 8e-44 | C2H2 family protein |