PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g06990.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 309aa    MW: 33973.1 Da    PI: 7.1629
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g06990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.2e-1161103246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++++Ed ++  ++   G++ W+ Ia+ ++ gRt++++k++w++
  Vradi08g06990.1  61 GEFSEDEDRIICTLFGSIGSR-WSIIASQLP-GRTDNDIKNYWNT 103
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.3213154IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.4E-114066IPR009057Homeodomain-like
SuperFamilySSF466892.98E-2040109IPR009057Homeodomain-like
PROSITE profilePS5129421.07955109IPR017930Myb domain
SMARTSM007172.0E-1159107IPR001005SANT/Myb domain
PfamPF002493.5E-1061103IPR001005SANT/Myb domain
CDDcd001672.00E-862105No hitNo description
Gene3DG3DSA:1.10.10.602.0E-1767106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVQVETGFPS HIKLGSCKFN FFFYPVFPMV YDNLSQTGLK RCGKSCRLRW LNYLRPNLKH  60
GEFSEDEDRI ICTLFGSIGS RWSIIASQLP GRTDNDIKNY WNTKLKKKMI GIMNPSALKK  120
PHQVTLSSML QNSTPSSSSS SSSLSLKGNH SSNHQPHLPH VPFTSPETIS YESLLSGKSC  180
STFESLYQVN CGFMLGGETS CSSSSDGSCN NNNQMNHVKG AEVGYVGVGG FDDQIGGLSY  240
LSSGVEDTQK LMSSNGGMTS GWTGEESRLW GESPSEYGLQ EIKQLISTSS CNNFMFDDSK  300
TGEMVMYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-194110940108B-MYB
1h8a_C8e-192810947128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g06990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512645.10.0transcription factor RAX2
TrEMBLA0A1S3V2X00.0A0A1S3V2X0_VIGRR; transcription factor RAX2
STRINGXP_007144336.11e-134(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-42myb domain protein 36