PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g06860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 22443.7 Da PI: 6.6287 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.8e-18 | 61 | 111 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y GVr ++ +g+++AeIrd + ng +r++lg+f++ae Aa a+++a+ +++g+ Vradi08g06860.1 61 YIGVRKRP-WGKYAAEIRDTTRNG--TRVWLGTFDSAEAAALAYDQAAFSMRGH 111 89******.**********54465..**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.3E-35 | 60 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.234 | 60 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-30 | 60 | 119 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-13 | 60 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-22 | 61 | 119 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.9E-9 | 61 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.14E-19 | 61 | 119 | No hit | No description |
PRINTS | PR00367 | 2.9E-9 | 84 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MFQEPSEILF ESLSSNHVLD TVHDSLSFDM VEESTTEENT NKAKQLVAKG TAEAKNKERS 60 YIGVRKRPWG KYAAEIRDTT RNGTRVWLGT FDSAEAAALA YDQAAFSMRG HNAVLNFPVK 120 XVKESLQEIQ YTCFTGSSPA LALXERHCIQ RKLSSQAKKS KGKNPSEHPT PTLLVLEDLG 180 VEYLDHLLSI SDQTQSPSCF H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-27 | 59 | 120 | 1 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g06860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-160 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014511606.1 | 1e-148 | ethylene-responsive transcription factor 1B-like | ||||
TrEMBL | A0A1S3UZU7 | 1e-147 | A0A1S3UZU7_VIGRR; ethylene-responsive transcription factor 1B-like | ||||
STRING | XP_007144910.1 | 1e-100 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF311 | 33 | 199 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-44 | ethylene response factor 1 |