PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi08g06550.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 498aa MW: 58138.4 Da PI: 6.6056

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi08g06550.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.2	1.1e-28	34	118	2	87
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 W++qe+l+L+e+r++++ ++++++ k+plW+e+s+ m +e+g++rs k+C+ek+enl k+ykk+k+g+ +r+ + +++++f+qlea Vradi08g06550.1 34 WPRQETLTLLEIRSRLDPKFKEANHKGPLWDEISRIMsEEHGYQRSGKKCREKFENLYKYYKKTKDGKAGRH--DGKHYRFFRQLEA 118 ***********************************999*************************985..5557*****85 PP
2	trihelix	45.1	2.7e-14	334	417	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 rW+++e L ++r e+e+r+ ++ +++ We v+ km+ g+ers+ +Ckekwe+++++ + + e e+++ +e++++c +f+ Vradi08g06550.1 334 RWPESEMTRLQQLRAEIETRFPCSEiSEEVSWEVVATKMACFGYERSALMCKEKWESMSNYQR-EGEKEGSKkCKENTRNCFFFK 417 8*******************876599****************************98655.555555551578899999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.6	30	93	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.864	34	91	IPR017877	Myb-like domain
Pfam	PF13837	7.1E-20	34	119	No hit	No description
CDD	cd12203	9.25E-19	34	98	No hit	No description
SMART	SM00717	0.27	331	394	IPR001005	SANT/Myb domain
Pfam	PF13837	7.3E-9	333	417	No hit	No description
CDD	cd12203	6.47E-14	334	397	No hit	No description
PROSITE profile	PS50090	6.353	334	392	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MPPHPTADLF PGHRNLSPLP TPQHQQQHYE VMIWPRQETL TLLEIRSRLD PKFKEANHKG 60 PLWDEISRIM SEEHGYQRSG KKCREKFENL YKYYKKTKDG KAGRHDGKHY RFFRQLEALY 120 GENSSTVSVP ETNVVGSIHF QASSHDPSQT NQDKFQSHNS KHCDSLSLTN STNFDTTSSD 180 DDNDHHSMEN ESIEKRRKRN SGRSWKVKIK DFIDSQMRKL VEKQKEWLDK LVKTLEEKEK 240 ERMLREEEWR KQEANRLERE QKFWAKERAW IEARDAALME ALQKLTGREI MKPETPNDGI 300 NLTGAEVQNH SENQNNEDES EILNSCNVMR GGDRWPESEM TRLQQLRAEI ETRFPCSEIS 360 EEVSWEVVAT KMACFGYERS ALMCKEKWES MSNYQREGEK EGSKKCKENT RNCFFFKNNN 420 DHRQSSLYDQ GSAYCDDISD QGKEIERLQT NNSSSPSKSN AGNVDHSDSC FPFLMSSEGG 480 NLWENYGLKI NKENQNH*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MPPHPTADLF PGHRNLSPLP TPQHQQQHYE VMIWPRQETL TLLEIRSRLD PKFKEANHKG  60
PLWDEISRIM SEEHGYQRSG KKCREKFENL YKYYKKTKDG KAGRHDGKHY RFFRQLEALY  120
GENSSTVSVP ETNVVGSIHF QASSHDPSQT NQDKFQSHNS KHCDSLSLTN STNFDTTSSD  180
DDNDHHSMEN ESIEKRRKRN SGRSWKVKIK DFIDSQMRKL VEKQKEWLDK LVKTLEEKEK  240
ERMLREEEWR KQEANRLERE QKFWAKERAW IEARDAALME ALQKLTGREI MKPETPNDGI  300
NLTGAEVQNH SENQNNEDES EILNSCNVMR GGDRWPESEM TRLQQLRAEI ETRFPCSEIS  360
EEVSWEVVAT KMACFGYERS ALMCKEKWES MSNYQREGEK EGSKKCKENT RNCFFFKNNN  420
DHRQSSLYDQ GSAYCDDISD QGKEIERLQT NNSSSPSKSN AGNVDHSDSC FPFLMSSEGG  480
NLWENYGLKI NKENQNH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi08g06550.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014512744.1	0.0	trihelix transcription factor PTL
Swissprot	Q9LZS0	1e-129	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A1S3V3M1	0.0	A0A1S3V3M1_VIGRR; trihelix transcription factor PTL
STRING	XP_007145244.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-108	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]