PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g05990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 187aa MW: 21739.9 Da PI: 9.9919 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.2e-19 | 29 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+ ++t++ql+ Le+ F+k+ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k+ Vradi08g05990.1 29 KKKRLTTDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKN 83 56679************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 118.4 | 4e-38 | 29 | 119 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rl+++q+ +LE+sF++e kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++d +++e+++Le+ev +L+ l+ Vradi08g05990.1 29 KKKRLTTDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEEEVMKLKGMLR 119 9*************************************************************************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.45E-19 | 14 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.184 | 24 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-18 | 27 | 88 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.5E-17 | 29 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.97E-15 | 29 | 85 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 31 | 92 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.6E-5 | 55 | 64 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 59 | 82 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.6E-5 | 64 | 80 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.0E-8 | 84 | 118 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MGAQDVMFLD QTLPSASFTT TTTHHTQDKK KRLTTDQLDS LESSFQKEIK LDPDRKMKLS 60 KELGLQPRQI AVWFQNRRAR WKNKQLEHLY DSLKQEFDVI SKEKQKLEEE VMKLKGMLRE 120 QASRTQVSTV KVMENPFSVG TDIRDQIKAI QQRDLHVVGW YGNYDVKLAV PADITLLVHS 180 KMHENR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 84 | RRARWKNKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g05990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-138 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007145270.1 | 3e-66 | hypothetical protein PHAVU_007G224800g | ||||
Swissprot | Q4PSR7 | 3e-44 | ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22 | ||||
Swissprot | Q9LZR0 | 7e-44 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | V7BH87 | 7e-65 | V7BH87_PHAVU; Uncharacterized protein | ||||
STRING | XP_007145270.1 | 1e-65 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 7e-46 | homeobox 51 |
Publications ? help Back to Top | |||
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