PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g05970.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 342aa    MW: 39880.4 Da    PI: 10.1953
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g05970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.69.3e-2599195186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      +Wt+ +v++Li a+ +++++ +++           +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ ++++
  Vradi08g05970.1  99 KWTDTMVRLLIMAVYYIGDEGGSEGtdkkkssgmlQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQSLLE 192
                      7**************99999986433556788888**********************************************559*******999 PP

         trihelix  84 qle 86 
                       +e
  Vradi08g05970.1 193 TME 195
                      997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.4E-2297186No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEPNGLGAGM FSGLVGVENS LPPQQQQNPH HLHNHSQMVP YGSHHDTDPH HQHHNQSIKQ  60
AYPQYSSIKT KQQQQSALSD DDDDTSDPKK KVSMWQRMKW TDTMVRLLIM AVYYIGDEGG  120
SEGTDKKKSS GMLQKKGKWK SVSRAMMEKG FYVSPQQCED KFNDLNKRYK RVNDILGKGT  180
ACRVVENQSL LETMELSPKM KEEVKKLLNS KHLFFREMSM RKKARKVRGV GVSAVMMQQL  240
NAEVNGVFQD GGRSAWEKKQ WMRNRILQLE EQQLNYQSQS YELEKQRLKW ARFSSKKERE  300
MERAKLENER RRLENERMVL LIRHKELELM SLQQQQQHSS T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g05970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512858.11e-152putative uncharacterized protein DDB_G0287113
TrEMBLA0A151TVB91e-152A0A151TVB9_CAJCA; Uncharacterized protein
TrEMBLA0A1S3V3E11e-151A0A1S3V3E1_VIGRR; Uncharacterized protein
STRINGPOPTR_0016s11010.11e-139(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.14e-58sequence-specific DNA binding transcription factors