PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g05950.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 486aa    MW: 53119.7 Da    PI: 6.1334
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g05950.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.49.1e-19103189186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++  + +L+ea++e+ ++l+rg+l++ +Weev+ ++  r +  ++s +qCk+k +nl+kryk ++++++++ + s+s++p+f+qle
  Vradi08g05950.1 103 EWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAFVVseRCENQSKSVEQCKNKVDNLKKRYKLERQRMSSG-CISTSHWPWFKQLE 189
                      5*************************************666677899*************************9.99999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-19101191No hitNo description
Gene3DG3DSA:3.40.1160.106.2E-62230478IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536332.36E-52235478IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.38E-110237479No hitNo description
PfamPF006961.7E-19238458IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MASCDDDDDF SLLRDDNHHL HQPYAPHHFS PSTVAVAVAP VPPKSIADDA DDYGNPFDDD  60
GGSEKRKDRE EIGEGATSYG FNKRSKAPQS SAGSAEYRKD REEWSDTAIV CLLEAYTEKF  120
TQLNRGNLRG RDWEEVAFVV SERCENQSKS VEQCKNKVDN LKKRYKLERQ RMSSGCISTS  180
HWPWFKQLEQ IVGNSLPAKF SDEDKAVVSA GTSPRQSKST GQANSIRSKA LTNLRWRRVV  240
FKISGAALTG SDTCNMDPKV AMLVSREVAI ASRLGVEVAI VVGGCNFFSG DAWVNATGLE  300
RCTAYQVGMM ATVMNSILLQ STLEKMGVQT RVQTSIAMQE FAELYNRQRA IRHLEKGRVI  360
IFGGICFGAG NPLFSTDIAA ALRASEPSAY ISFNLAVNAE AVLKGTNVDG VYDCNSRDNN  420
FTFEHISFRE LGSRGITSMD ASALTLCKEN AIPVVVFNLL EPGNISKALC GEQVGTLIDQ  480
TGAVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A9e-582284781239Uridylate kinase
3ek5_B9e-582284781239Uridylate kinase
3ek5_C9e-582284781239Uridylate kinase
3ek5_D9e-582284781239Uridylate kinase
3ek5_E9e-582284781239Uridylate kinase
3ek5_F9e-582284781239Uridylate kinase
3ek6_A9e-582284781239Uridylate kinase
3ek6_B9e-582284781239Uridylate kinase
3ek6_C9e-582284781239Uridylate kinase
3ek6_D9e-582284781239Uridylate kinase
3ek6_E9e-582284781239Uridylate kinase
3ek6_F9e-582284781239Uridylate kinase
3nwy_A1e-5720747826279Uridylate kinase
3nwy_B1e-5720747826279Uridylate kinase
3nwy_C1e-5720747826279Uridylate kinase
3nwy_D1e-5720747826279Uridylate kinase
3nwy_E1e-5720747826279Uridylate kinase
3nwy_F1e-5720747826279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g05950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027936963.10.0uncharacterized protein LOC114191776
TrEMBLA0A4D6MXW20.0A0A4D6MXW2_VIGUN; Uridylate kinase
STRINGXP_007145266.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein