PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi08g05270.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRF

Protein Properties

Length: 223aa MW: 24396 Da PI: 6.4122

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi08g05270.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	44.8	2.2e-14	70	95	1	26
WRC 1 daepgrCrRtDGKkWRCsrrvlegkk 26 d+epgrCrRtDGKkWRCsr+++eg++ Vradi08g05270.1 70 DPEPGRCRRTDGKKWRCSREAVEGQN 95 79*********************985 PP
2	QLQ	54.3	4.2e-19	4	39	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 F+ aQ+q+L+ Q l+++y++a++PvPp+Llq+i+k Vradi08g05270.1 4 CFSFAQWQELELQTLIFRYMLAGAPVPPQLLQPIKK 39 6*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.0E-10	3	39	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.524	4	39	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.5E-14	5	37	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	15.565	70	115	IPR014977	WRC domain
Pfam	PF08879	7.4E-11	71	94	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MESCFSFAQW QELELQTLIF RYMLAGAPVP PQLLQPIKKS FLHSPPPFLL QLYHPPLLES 60 GYYWGREAVD PEPGRCRRTD GKKWRCSREA VEGQNSSGAK SDSKSLSENH DHVDGNGRSD 120 GHVLRHFFDD WPRTLQEQDH GESNGSQNNN TGTYLSMSTQ GITSSDVSLR LSTGHAENTC 180 HVASVGGPLA EALRSSTSTS SPTSVLLQLP TSSACNTSFI ST*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269\|PubMed:12974814, ECO:0000269\|PubMed:22419826}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi08g05270.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165, ECO:0000269\|PubMed:22419826}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015746	0.0	AP015746.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0702, complete sequence, cultivar: Shumari.
GenBank	AP016085	0.0	AP016085.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_1041, complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014512938.1	1e-148	growth-regulating factor 3
Swissprot	Q9SJR5	1e-34	GRF3_ARATH; Growth-regulating factor 3
TrEMBL	A0A1S3V3L4	1e-147	A0A1S3V3L4_VIGRR; growth-regulating factor 3
STRING	GLYMA13G21625.1	1e-109	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7895	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36400.1	2e-36	growth-regulating factor 3

Publications ? help Back to Top
Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. Plant Cell, 2013. 25(9): p. 3570-83 [PMID:24076976] Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518] Liu J,Rice JH,Chen N,Baum TJ,Hewezi T Synchronization of developmental processes and defense signaling by growth regulating transcription factors. PLoS ONE, 2014. 9(5): p. e98477 [PMID:24875638] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]