PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g05240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 21107.7 Da PI: 6.7922 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.1 | 2.6e-14 | 17 | 67 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr++ +g+Wv+eIr p n+k++r++lg+f ++Aa a++ a+++++g Vradi08g05240.1 17 PVYKGVRQR--NGKWVSEIRQP--NNKNARVWLGTFARSDMAAVAYDVAALAFKG 67 68****975..6*********9..3467**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-9 | 17 | 67 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-17 | 18 | 75 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.401 | 18 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-26 | 18 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-24 | 18 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.21E-22 | 19 | 75 | No hit | No description |
PRINTS | PR00367 | 8.7E-6 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-6 | 57 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MQKRKAGRKK FHETRHPVYK GVRQRNGKWV SEIRQPNNKN ARVWLGTFAR SDMAAVAYDV 60 AALAFKGDGA SLNFPGAISS LPRLNSATSS VRAIQFAASQ AAEKHFSCAE LQKLGDDLSS 120 EGGSGSFSWD EDCSELSSEE GSRKFFWDEE EVFNMPELLN SMAEALIITP PALQKGFNWV 180 GGETTVDLTL W* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-13 | 19 | 80 | 6 | 68 | ATERF1 |
3gcc_A | 2e-13 | 19 | 80 | 6 | 68 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g05240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412974.1 | 1e-117 | PREDICTED: ethylene-responsive transcription factor ERF024-like | ||||
TrEMBL | A0A4D6MZ26 | 1e-123 | A0A4D6MZ26_VIGUN; EREBP-like factor | ||||
STRING | XP_007145241.1 | 1e-113 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 4e-33 | C-repeat/DRE binding factor 1 |