PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g05220.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 97aa    MW: 10782.9 Da    PI: 4.5802
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g05220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.33.7e-081739123
              AP2  1 sgykGVrwdkkrgrWvAeIrd.ps 23
                     ++y+GVr+++ +g+Wv+eIr+  +
  Vradi08g05220.1 17 TRYRGVRQRS-NGKWVSEIRVqEK 39
                     68*****999.8*********554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-81839IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MYSHNATGSS RPSSGTTRYR GVRQRSNGKW VSEIRVQEKQ AGTSNEFVDE DLIFDMPNVL  60
VNMAEGMLLS PPPFDIGVEP NSPENIEHET SLWNFP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g05220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150412e-81AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513240.12e-39ethylene-responsive transcription factor ERF024
TrEMBLA0A1S3V4M35e-38A0A1S3V4M3_VIGRR; ethylene-responsive transcription factor ERF024
STRINGXP_007145242.11e-33(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.14e-13ERF family protein