PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g05100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 175aa MW: 19695.2 Da PI: 6.789 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.4 | 1.8e-19 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd llv++v+++G g+W++++r g++R +k+c++rw +yl Vradi08g05100.1 24 KGPWTAEEDRLLVEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYL 71 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.152 | 19 | 75 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-22 | 21 | 74 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-16 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-17 | 24 | 71 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.47E-23 | 25 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.90E-12 | 26 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-7 | 75 | 98 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MYWGKVLGGQ IGGGGVMEEE VWRKGPWTAE EDRLLVEYVR LHGEGRWNSV SRLAGLKRNG 60 KSCRLRWVNY LRPDLKRGQI TPQEESIILE LHARWGNRAP YAASQSRQEM INMQQNTTEE 120 QGFLYSMLNG NFSAAETSPE ETFLDGLWNL DHGNFTVASA ASKVGLYNLV APFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-15 | 3 | 98 | 17 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g05100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096753 | 1e-102 | BT096753.1 Soybean clone JCVI-FLGm-15B2 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027935634.1 | 2e-59 | transcription factor MYB108-like isoform X1 | ||||
TrEMBL | A0A0S3STF1 | 2e-64 | A0A0S3STF1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007145351.1 | 8e-59 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 6e-50 | myb domain protein 79 |