PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g03620.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 199aa    MW: 22338.9 Da    PI: 7.4397
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g03620.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18116166255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp+     +r++lg+f+++ +Aaka++ a+ k++g
  Vradi08g03620.1 116 RYRGVRRRP-WGKFAAEIRDPTRK--GTRVWLGTFDSEIDAAKAYDCAAFKMRG 166
                      8********.**********8542..4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.52E-29115174No hitNo description
SuperFamilySSF541711.31E-22116176IPR016177DNA-binding domain
PfamPF008471.8E-13116166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-31116175IPR001471AP2/ERF domain
SMARTSM003801.7E-36116180IPR001471AP2/ERF domain
PROSITE profilePS5103224.316116174IPR001471AP2/ERF domain
PRINTSPR003673.6E-13117128IPR001471AP2/ERF domain
PRINTSPR003673.6E-13156176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MTTAEETSNL DLIRQHLLGE NISSSFFSNF SNLNPVKLEA PSSPHFDFSD NTSFFTFLQG  60
YDLVADMEFV DHKPIMNSTS TPTISTPLNK CNSPEPLASS ESQEKAKKAE YDEAKRYRGV  120
RRRPWGKFAA EIRDPTRKGT RVWLGTFDSE IDAAKAYDCA AFKMRGQKAI LNFPLEAGES  180
DPKPNTCGRK RRRDNLES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-27113175264ATERF1
3gcc_A2e-27113175264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g03620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510944.11e-147ethylene-responsive transcription factor ERF106
TrEMBLA0A1S3UYH21e-146A0A1S3UYH2_VIGRR; ethylene-responsive transcription factor ERF106
STRINGXP_007145470.11e-118(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-38ERF family protein