PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g02880.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 284aa    MW: 32145.5 Da    PI: 4.7187
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g02880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1353.1e-11121165145
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                      e+ +k+ +r  +NR AA rsR+RKka+++ Le k+  Le+e ++L
  Vradi08g02880.1 121 EPTSKKLKRQLRNRDAAVRSRERKKAYLKDLEMKSRYLEGECRRL 165
                      6789************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.8E-11117183No hitNo description
SMARTSM003382.5E-6121185IPR004827Basic-leucine zipper domain
PfamPF001704.5E-9122165IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.634123165IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-10125181No hitNo description
CDDcd147041.38E-13126176No hitNo description
PROSITE patternPS000360128143IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDTSEETLLT QFDWDSFFDQ VPEFDAHDFL QDDTAPVSVA GDNPSPNDPV LSQIENMLMA  60
HPENDVVSTE TPLSESSESD FYRLLEEILV EPDEEPESER SKAESEEGSE KDRTGDAVSD  120
EPTSKKLKRQ LRNRDAAVRS RERKKAYLKD LEMKSRYLEG ECRRLGHLLQ FCYAENNALR  180
LCLQSRGAYG ASMTSQESAV LLLEPLLLGS LLWVMGIMCH LSLPLMLCLT AALPRENIVQ  240
KGVIKVTQKG PESNISKCFQ MQSFVKSRRC RASRTKMKFI FMF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g02880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512302.10.0bZIP transcription factor 60
TrEMBLA0A1S3V2930.0A0A1S3V293_VIGRR; bZIP transcription factor 60
STRINGXP_007145545.11e-170(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120093032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.11e-16basic region/leucine zipper motif 60