PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi08g02290.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 926aa MW: 103416 Da PI: 5.9209

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi08g02290.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.3	4.1e-09	863	916	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.......TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmg.......kgRtlkqcksrwqk 46 +WT+eE+e l ++v+++G + Wk I + k+Rt+ ++k++w + Vradi08g02290.1 863 PWTAEEEEMLREGVQKFGFDdpkKWKNILAFGShvfqkvgKRRTPIDLKDKWKN 916 7********************99999987667777888**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.40.10	8.6E-10	565	618	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57903	1.84E-9	565	619	IPR011011	Zinc finger, FYVE/PHD-type
PROSITE profile	PS50016	8.618	568	617	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	4.6E-6	570	615	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	571	614	IPR019786	Zinc finger, PHD-type, conserved site
SuperFamily	SSF46689	8.61E-12	858	919	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.5E-11	858	921	IPR009057	Homeodomain-like
SMART	SM00717	5.4E-8	860	920	IPR001005	SANT/Myb domain
CDD	cd11660	3.32E-15	862	919	No hit	No description
PROSITE profile	PS50090	7.758	863	918	IPR017877	Myb-like domain
Pfam	PF13921	8.8E-9	864	924	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 926 aa Download sequence Send to blast
MDGGDDPSTL VWPWVIEAVA ARKEIPNPTL LTVVDDDVGL IDAAPVGKDK FGENVKEMVS 60 LRCLETLSTI MVDGVASSSS DSRAGFDFSR SCQDVLQEIL DEILLSNLKM NAPLLKSDLY 120 PFINHKRAAT SKCHLEQLRQ TILEGTHPHT DYLKERSGLF PQNNSYSVIV NDVNRDDHSA 180 KEAGNSANTE NVLGKDNSVS LENGNKSSRE HLLDNNSSPS KSRVYSVDDY LTKHFHGKQV 240 CVKECGDFFR TSKRVKLSAS TSFEPRKEKP DSQHRQEVSE HLTERILLVS EQGDHRVENN 300 NKETVGGGSS EDIPYGCNVS KLCQPSSHIE VPPDESNIPF NDALMLQPTF GGENSQQLLV 360 KSIPHEAFAD GIQHGISGGK PKSKHEKDLQ LEDPNDSPHQ IAGVKEHDHT GNGCRVEVSG 420 DIGYQSETNS LKMKKQTVQN LCLKCNEGDQ LPIRDVNVIQ PVVTECCLGM ATTMPTNDAN 480 AEKNQQTTNL HQPKQTEPDI TALNLSQEPV ACDETIVGVV NGCGAELSSD SDEYHNEKKC 540 LEAKKHEFLH SHCMVDHDFK AMNEPNEKNL CMKCNQGGQL LACKTTTCPM MVHENCLGAF 600 AQFDAKGDFF CPFCTYSHTI SEYIEAKKEA SLARKELAIF ISKGKMSQAA ESLLNEFRTQ 660 EHCFSRKSSE YQHIHVKNNK DEQLTKCGDN REDHVDEHAN EANNLLFGRS QQQTHISCTY 720 SSFREKENIS NGSVELLREE KIGQMPNAEN ITGVRGEENK VPTDHVDGLV GDTCINEKEN 780 IALVNKSNAG YESPQETAKQ LDTDGATESV CEHNTGKEEM SENESEKHRI SRYSMRYRKH 840 KMQCKPEASP AFLANQLRRK YIPWTAEEEE MLREGVQKFG FDDPKKWKNI LAFGSHVFQK 900 VGKRRTPIDL KDKWKNMCKA SPKSK*

Sequence ? help Back to Top

Protein Sequence Length: 926 aa Download sequence Send to blast

MDGGDDPSTL VWPWVIEAVA ARKEIPNPTL LTVVDDDVGL IDAAPVGKDK FGENVKEMVS  60
LRCLETLSTI MVDGVASSSS DSRAGFDFSR SCQDVLQEIL DEILLSNLKM NAPLLKSDLY  120
PFINHKRAAT SKCHLEQLRQ TILEGTHPHT DYLKERSGLF PQNNSYSVIV NDVNRDDHSA  180
KEAGNSANTE NVLGKDNSVS LENGNKSSRE HLLDNNSSPS KSRVYSVDDY LTKHFHGKQV  240
CVKECGDFFR TSKRVKLSAS TSFEPRKEKP DSQHRQEVSE HLTERILLVS EQGDHRVENN  300
NKETVGGGSS EDIPYGCNVS KLCQPSSHIE VPPDESNIPF NDALMLQPTF GGENSQQLLV  360
KSIPHEAFAD GIQHGISGGK PKSKHEKDLQ LEDPNDSPHQ IAGVKEHDHT GNGCRVEVSG  420
DIGYQSETNS LKMKKQTVQN LCLKCNEGDQ LPIRDVNVIQ PVVTECCLGM ATTMPTNDAN  480
AEKNQQTTNL HQPKQTEPDI TALNLSQEPV ACDETIVGVV NGCGAELSSD SDEYHNEKKC  540
LEAKKHEFLH SHCMVDHDFK AMNEPNEKNL CMKCNQGGQL LACKTTTCPM MVHENCLGAF  600
AQFDAKGDFF CPFCTYSHTI SEYIEAKKEA SLARKELAIF ISKGKMSQAA ESLLNEFRTQ  660
EHCFSRKSSE YQHIHVKNNK DEQLTKCGDN REDHVDEHAN EANNLLFGRS QQQTHISCTY  720
SSFREKENIS NGSVELLREE KIGQMPNAEN ITGVRGEENK VPTDHVDGLV GDTCINEKEN  780
IALVNKSNAG YESPQETAKQ LDTDGATESV CEHNTGKEEM SENESEKHRI SRYSMRYRKH  840
KMQCKPEASP AFLANQLRRK YIPWTAEEEE MLREGVQKFG FDDPKKWKNI LAFGSHVFQK  900
VGKRRTPIDL KDKWKNMCKA SPKSK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi08g02290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022641594.1	0.0	uncharacterized protein LOC106772532 isoform X4
TrEMBL	A0A3Q0FG22	0.0	A0A3Q0FG22_VIGRR; uncharacterized protein LOC106772532 isoform X4
STRING	XP_007145628.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3872	22	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.2	3e-08	MYB_related family protein