PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g02280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 335aa MW: 37665.3 Da PI: 6.0494 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 77 | 126 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p++ r r +lg+f taeeAa a+++a+++l+g Vradi08g02280.1 77 EYRGVRQRT-WGKWVAEIREPKK---RSRLWLGSFATAEEAAFAYDQAARRLYG 126 69****999.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.59E-20 | 76 | 135 | No hit | No description |
Pfam | PF00847 | 1.3E-11 | 77 | 126 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-30 | 77 | 135 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.576 | 77 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.7E-36 | 77 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 77 | 135 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.3E-10 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-10 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MATSPNVTTF NTKLHSCSYI SRSIPPSSCI NSKCIIIIIL PQFPSLSAMD GCKNSPLKPW 60 KKGPTRGKGG PQNASCEYRG VRQRTWGKWV AEIREPKKRS RLWLGSFATA EEAAFAYDQA 120 ARRLYGPDAY LNLPHMQPNL INSTTKSQNF KWFPSNNFIS MFPSRGLLNL NAQPSLHLIH 180 QRLQQLKHNG LSAPTQPPHS KVVELDNLVN QNHPEILPPQ PQDSQASPQK LTADFEEKPE 240 IDLLEFLQQM GILKDEREAE KTDSSGSSAV SEAASRDENE QPGVFSDMSS VNWEELIEMH 300 DHEVVCNYLA SEEIQFEAYD TNEDLTFSTS IWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-18 | 78 | 134 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00411 | DAP | Transfer from AT3G57600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g02280.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014513185.2 | 0.0 | dehydration-responsive element-binding protein 2F | ||||
Swissprot | Q9SVX5 | 2e-86 | DRE2F_ARATH; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | A0A1S3V4H1 | 0.0 | A0A1S3V4H1_VIGRR; dehydration-responsive element-binding protein 2F | ||||
STRING | XP_007145629.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5477 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 1e-75 | ERF family protein |
Publications ? help Back to Top | |||
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