PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g01210.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 294aa    MW: 32465.7 Da    PI: 10.1327
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g01210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.72.3e-29113168258
        CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       p YVNaKQy++I++RRq+Rak+  e+k  +k rkpy+heSRh hA+rRpRg+gGrF
  Vradi08g01210.1 113 GPTYVNAKQYHGIIRRRQSRAKAVLENKY-IKRRKPYMHESRHLHAMRRPRGNGGRF 168
                      699**************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.7E-32110171IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.67111171IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-25114168IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.6E-23114136IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.6E-23145168IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAMRTAYLKE HEGIVHNSVG QLSSGTSAPW WNGLGSQPVY GDYCGQNKPF SLEFSNYIDP  60
FSGGKQAVRG AEPVINRGHA TQFSIFPGIK FGFGCISTRG RIMLPRNMAS NNGPTYVNAK  120
QYHGIIRRRQ SRAKAVLENK YIKRRKPYMH ESRHLHAMRR PRGNGGRFLN TRKNNNGNGG  180
NDSDVNKMGG LQFLSSTSQS SEMLQSDVGM NSPMETDECS VNMSSSEVNS MYSREGFDGF  240
PVYPLGSPAD SLTNMVGKPF LAKLRQLIHG SPDSARAFHD MDVLYMVMAM QST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-17114176466NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126145RRRQSRAKAVLENKYIKRRK
2126146RRRQSRAKAVLENKYIKRRKP
3127146RRQSRAKAVLENKYIKRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g01210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-144AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511333.11e-166nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_022640501.11e-166nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_022640502.11e-166nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_022640503.11e-166nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLA0A1S3UZ231e-164A0A1S3UZ23_VIGRR; nuclear transcription factor Y subunit A-10 isoform X1
STRINGXP_007145780.11e-113(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.25e-32nuclear factor Y, subunit A10