PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g00290.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 337aa    MW: 38514.6 Da    PI: 4.6308
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g00290.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-172067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v+q+G+g+W+ + ++ g+ R++k+c++rw ++l
  Vradi08g00290.1 20 KGQWTEEEDAILAAYVTQHGPGNWNIVQQRTGLLRCGKSCRLRWTNHL 67
                     799*****************************99***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-211575IPR009057Homeodomain-like
PROSITE profilePS5129422.8341571IPR017930Myb domain
SMARTSM007177.2E-131969IPR001005SANT/Myb domain
PfamPF002493.6E-152067IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-162176IPR009057Homeodomain-like
CDDcd001675.09E-112367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSSSSHEHKS DDNEGNNLRK GQWTEEEDAI LAAYVTQHGP GNWNIVQQRT GLLRCGKSCR  60
LRWTNHLRPD LRRETSLTTY THRDSEVVGT SSEHAMLNNS GNIHTQNQPL RVPPISIVFE  120
NMNLSVKPEE KQMYDVQLPE ACTSSSVPHV VFNNSNNNSQ NQPLYAQPIF QELHDFDRLP  180
RGWMYDDYAE PPPWPPSCDD CAELPPFLPS CDDYAELPPF PPSCDDYAKL PPLPLSFAES  240
LSLRENYEDE KKIRYYESRS PRSNGYLETM FYPPKVSKDD IPMQGELNLG NSREISDQKK  300
PQDEDDDLLG ELIWIENQHG PYKDSSCGYV HPFLKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g00290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-108AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412808.11e-101PREDICTED: uncharacterized protein LOC108324372
TrEMBLA0A0L9TTG71e-100A0A0L9TTG7_PHAAN; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.14e-24myb domain protein 101