PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g00250.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 341aa    MW: 39448 Da    PI: 4.4001
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g00250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35371292103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+i++d +++e++sws+ +nsfvv+d++ f+ ++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+
  Vradi08g00250.1  37 FLTKTYDIVDDVSTDEIVSWSRGNNSFVVWDPQAFSISLLPKYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQKHLLK 121
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                       i+r+ks+
  Vradi08g00250.1 122 IIRRRKSS 129
                      *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-3830120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.3E-3432126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-5933126IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3037126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-203760IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-2088100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MNRIDDGPVI VKEEFPGEGL VAPQPLEGLH ESGPPPFLTK TYDIVDDVST DEIVSWSRGN  60
NSFVVWDPQA FSISLLPKYF KHNNFSSFVR QLNTYGFRKV DPDKWEFANE GFLRGQKHLL  120
KIIRRRKSSH QPQAVQQSME HCVEVGRFGL DGEIDGLRRD KQVLMMELVK LRQQQQNTKN  180
HLQSMESRLK KTEQKQQQMM KFLAKAMQNP NFLQQLVQER EWRKELEEAI SSKRRRPIDE  240
GPCDAEEFSA LVKLEQEEYN EISELEVSDI ELAMNMEEQS GSQENTYGEE EKGGEDESRN  300
EGIEEVLWEE LLNEGVEEDL LALENDDNEH VTLLSEELGY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-253212912123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g00250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512857.10.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-130HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1S3V3U90.0A0A1S3V3U9_VIGRR; heat stress transcription factor A-6b
STRINGXP_007145912.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-124heat shock transcription factor A6B