PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g31420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 296aa MW: 33988.4 Da PI: 6.4049 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.8 | 1.5e-51 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtd+elv++yL++k++++++ + +ike+d+yk++Pw+Lp ++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + Vradi07g31420.1 7 LPPGFRFHPTDDELVNHYLCRKCAAQSIAA-PIIKEIDLYKFDPWQLPDMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGK 99 79*************************999.88***************6666689*************************************98 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 e+ g+kk Lvfy g+apkg+kt+W+mheyrl Vradi07g31420.1 100 --PEARGIKKALVFYAGKAPKGVKTNWIMHEYRL 131 ..6789**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-61 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.279 | 7 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-27 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MQGELELPPG FRFHPTDDEL VNHYLCRKCA AQSIAAPIIK EIDLYKFDPW QLPDMALYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKPIGKP EARGIKKALV FYAGKAPKGV 120 KTNWIMHEYR LANVDRSASK KNNNLRLDDW VLCRIYNKKG KIEKYNNVDG VVEQKPAKLP 180 EEVLFQHEMK PEIQMYGHDH FRNNQLYMDT SDSVPRLNTD SSCSEHVVSP DGTCEKEVQS 240 EPKWNDLELG PDLVSGYDFN FMELSADDAF APQAQFQMNQ PSTWQDMFAY LPKTF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-82 | 2 | 164 | 10 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g31420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014509424.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-120 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A1S3UU51 | 0.0 | A0A1S3UU51_VIGRR; NAC domain-containing protein 2 | ||||
STRING | XP_007159873.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-121 | NAC family protein |