PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g28850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 92aa MW: 10206.6 Da PI: 10.4013 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.4 | 3.9e-09 | 18 | 38 | 24 | 45 |
HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwq 45 W++Ia+ ++ gRt++++k++w+ Vradi07g28850.1 18 WSLIAAQLP-GRTDNDVKNHWN 38 *********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.701 | 1 | 45 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.65E-9 | 6 | 51 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-11 | 17 | 51 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.03E-6 | 18 | 38 | No hit | No description |
Pfam | PF00249 | 1.1E-6 | 18 | 38 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWWSL IAAQLPGRTD NDVKNHWNAK LKKKFLVTNT NATVDTVCPQ 60 FTTSTTPQSR AENRVFDHEN SAEPRVLVGR L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g28850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-103 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506838.2 | 6e-43 | transcription factor MYB87-like | ||||
TrEMBL | A0A1S3ULA4 | 1e-41 | A0A1S3ULA4_VIGRR; transcription factor MYB87-like | ||||
STRING | XP_007160258.1 | 4e-31 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 4e-13 | myb domain protein 87 |