PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g28620.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20267.4 Da    PI: 9.9053
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g28620.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.55.4e-211256448
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                     ++   rqvtfskRr+g++KKA+ELS+LC+ae+a+++fs  ++ y 
  Vradi07g28620.1 12 KDPNTRQVTFSKRRTGLFKKANELSILCGAEIAIVVFSIGNRPYS 56
                     56678********************************98776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.49E-25175IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.002161IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-231257IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGRRKIEIAA VKDPNTRQVT FSKRRTGLFK KANELSILCG AEIAIVVFSI GNRPYSFGHP  60
GVDVVAAKFL EHEIIKSNDV KQNNVEVGDI GRLNQQLLDI EARILVEEKK GLELDQILKQ  120
HRLSQPSQFK QLQDSYLEFQ RRLKDYTDAI EVSECLILLA QEPVVEITKQ VKKRRKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-18172172Myocyte-specific enhancer factor 2B
1tqe_Q3e-18172172Myocyte-specific enhancer factor 2B
1tqe_R3e-18172172Myocyte-specific enhancer factor 2B
1tqe_S3e-18172172Myocyte-specific enhancer factor 2B
6c9l_A3e-18172172Myocyte-specific enhancer factor 2B
6c9l_B3e-18172172Myocyte-specific enhancer factor 2B
6c9l_C3e-18172172Myocyte-specific enhancer factor 2B
6c9l_D3e-18172172Myocyte-specific enhancer factor 2B
6c9l_E3e-18172172Myocyte-specific enhancer factor 2B
6c9l_F3e-18172172Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171175KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g28620.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506834.11e-126agamous-like MADS-box protein AGL29
TrEMBLA0A1S3ULJ71e-125A0A1S3ULJ7_VIGRR; agamous-like MADS-box protein AGL29
STRINGXP_007160291.16e-99(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-32AGAMOUS-like 29