PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g28390.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CPP
Protein Properties Length: 515aa    MW: 54959.7 Da    PI: 5.6927
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g28390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR231.6e-0768921742
              TCR 17 YCeCfaagkkCseeCkCedCkNkeek 42
                     YCeCfa+g +C+  C+C +C N+ e+
  Vradi07g28390.1 68 YCECFASGIYCDG-CNCVNCYNNVEN 92
                     *************.********9875 PP
2TCR51.12.6e-16137176140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Vradi07g28390.1 137 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 176
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163431.27658177IPR005172CRC domain
SMARTSM011140.00446392IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.7E-56889IPR005172CRC domain
SMARTSM011148.4E-20137178IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.6E-13140175IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MGEGEGEGSD CAPKNVVPND VVANALLPSD VPAKKLARQL DFTGFGGMPP QSPVVLPLPP  60
SASVRVGYCE CFASGIYCDG CNCVNCYNNV ENEAARREAV EATLERNPNA FRPKIASSPH  120
GTRDSREDAG EILILGKHNK GCHCKKSGCL KKYCECFQAN ILCSENCKCM DCKNFEGSEE  180
RQALFHGDQN NNMVYIQQAA NAAITGAIGS SGYSSPPISK KRKGQELLFG STIKDPSLGR  240
LGQQANNVRV PAPSSSMSPI PGARVGPATL GPSKLMYRSL LADIIQPQHL KELCSVLVLV  300
SGQAAKTFTD QKNLMDKHAE DHTETSLASS TQEQLPNQKE ANVEKAMADD DCLSANQTDK  360
ISPDNSCSDG ADVPKGRPMS PGTLALMCDE QDTMFMTSAS PIGSRAHACN TSSQPPYGQG  420
MTEVYAEQEK IVLTKFRDFL NRVITMGEIN ETKCSSLARS ELESEKDPNN NCTGNNTSTE  480
TAHQQGTTNN VVAKAATNIT STSSFPGGSL IPEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-266818625132Protein lin-54 homolog
5fd3_B2e-266818625132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g28390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505757.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-175TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1S3UIA20.0A0A1S3UIA2_VIGRR; protein tesmin/TSO1-like CXC 5
STRINGXP_007160326.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-150Tesmin/TSO1-like CXC domain-containing protein