PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi07g27710.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 310aa MW: 34713.9 Da PI: 7.6459

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g27710.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.1	8.1e-54	12	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL +kv++ +++ +v++ vd++k+ePwdLp k++ +ekewyfFs +d+ky+tg r+nrat+sgyWk+tgkdke++ Vradi07g27710.1 12 LPPGFRFHPTDEELITYYLLRKVSDVSFTS-KVVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFG 104 79***********************999.89***********988999************************************ PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g l+g+kktLvfy grap+gek++Wvmheyrl Vradi07g27710.1 105 -GGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRL 137 .*****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-64	8	158	IPR003441	NAC domain
PROSITE profile	PS51005	60.287	12	158	IPR003441	NAC domain
Pfam	PF02365	4.9E-29	13	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MGEVKNNMEE NLPPGFRFHP TDEELITYYL LRKVSDVSFT SKVVAVVDLN KSEPWDLPGK 60 ASMGEKEWYF FSLKDRKYPT GLRTNRATES GYWKTTGKDK EIFGGGVLIG MKKTLVFYMG 120 RAPRGEKSNW VMHEYRLQNK QPYRSSKEEW VICRVFQKNS APKKAQQTSS SQPSQESPSS 180 MANEFGDADL PNLNSIGNSS SVAAQIYNSG DPSNVSTNMN LNMNWASATE LPSLPWPSGL 240 MLNPNLSVNS LLLRALQLRS TYQQREAATG DHFATYVPHN NIGTDDLSVS ASSRGLELQE 300 QPFNMDSIW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-57	11	164	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-57	11	164	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-57	11	164	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-57	11	164	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-57	11	164	19	174	NAC domain-containing protein 19
3swm_B	2e-57	11	164	19	174	NAC domain-containing protein 19
3swm_C	2e-57	11	164	19	174	NAC domain-containing protein 19
3swm_D	2e-57	11	164	19	174	NAC domain-containing protein 19
3swp_A	2e-57	11	164	19	174	NAC domain-containing protein 19
3swp_B	2e-57	11	164	19	174	NAC domain-containing protein 19
3swp_C	2e-57	11	164	19	174	NAC domain-containing protein 19
3swp_D	2e-57	11	164	19	174	NAC domain-containing protein 19
4dul_A	2e-57	11	164	16	171	NAC domain-containing protein 19
4dul_B	2e-57	11	164	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g27710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014506790.1	0.0	NAC domain-containing protein 100
TrEMBL	A0A1S3ULB5	0.0	A0A1S3ULB5_VIGRR; NAC domain-containing protein 100
STRING	XP_007160376.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4946	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-103	NAC domain containing protein 58