PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g27680.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CO-like
Protein Properties Length: 370aa    MW: 41395.1 Da    PI: 5.7197
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g27680.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box248.1e-081558340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+ + + ++++fC  ++ +lC+ C +  H+       H++v
  Vradi07g27680.1 15 ARACDSCISRRARWFCAADNAFLCHGCDTLVHSAnqlasrHERV 58
                     578*****************************657788888876 PP
2CCT66.85.8e-23314356143
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                      Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+
  Vradi07g27680.1 314 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 356
                      9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.3521360IPR000315B-box-type zinc finger
SMARTSM003361.1E-81360IPR000315B-box-type zinc finger
PfamPF006434.2E-61558IPR000315B-box-type zinc finger
CDDcd000212.01E-81660No hitNo description
PfamPF062038.1E-18314356IPR010402CCT domain
PROSITE profilePS5101715.993314356IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MRDMKDAGAL GAKTARACDS CISRRARWFC AADNAFLCHG CDTLVHSANQ LASRHERVRL  60
QTASSKVTTT TTHAWHSGFT RKARTPRHNN NKHFALQQRL KEEVLFNNSS VLPLVPEMGG  120
EEQEPVAVDN DETEEQMLCR VPVFDNYDVR TDDLDSFSDM DFAEFAADVE NLLEKEDDEV  180
SARVGGGVQG AMAKVKDEED IDGDVACYLE SVFDMTNDDA FHWNSIESVL SDAREKKECV  240
VASDGAVGEE GGTKRDIFLR LNYDEVITAW SSQGSSPWTT SNPPKFNSGY DFCLGLSGVD  300
GDVRALRGDL DGGREARVSR YREKRRTRLF AKKIRYEVRK LNAEKRPRMK GRFVKRTCFV  360
GANAFPAYQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324340RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g27680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505914.10.0zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD02e-84COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A1S3UIZ10.0A0A1S3UIZ1_VIGRR; zinc finger protein CONSTANS-LIKE 16
STRINGXP_007160372.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.14e-86B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]