PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g27330.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 630aa    MW: 69926.1 Da    PI: 6.667
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g27330.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.14.3e-20127214183
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F 
  Vradi07g27330.1 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPKRHLLTTGWSVFVSSKKLVAGDAFIFL 214
                      99****************************964333..4459***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-36115218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-36121270IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-17125213No hitNo description
SMARTSM010192.4E-15127228IPR003340B3 DNA binding domain
PfamPF023624.0E-18127214IPR003340B3 DNA binding domain
PROSITE profilePS508639.277127235IPR003340B3 DNA binding domain
PfamPF065071.8E-5298323IPR010525Auxin response factor
PROSITE profilePS5174511.449539629IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MAFSASTHKS AGIHPGAIND DLYKELWHAC AGPLVSLPRE GERVYYFPQG HMEQLEASIH  60
EGLEQQMPSF NLPSKILCKV VNVHLRAESE TDEVYAQITL LPEVDQSEVT SPDDPLTEIP  120
RAKIHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAT DLHGNEWHFR  180
HIFRGQPKRH LLTTGWSVFV SSKKLVAGDA FIFLRQCFLF PSCFCSLMLF VILAVLCCIL  240
YSRGENGELR VGVRRVMRQQ SNAPSSVISS HSMHLGVLAT ASHAITTGTL FSVFYKPRFS  300
GTIVGVGDNK SSVWPDSEWR SLKVQWDEPS SILRPDRVSS WELEPHVSTT PANPQPTQRN  360
KRARPLILPS TVPDSSLQGM WKSAAESTSF SYCDPQHGRG LYPSPKFNPS ANNFIGFSGN  420
SFVGPPSNKS IYWSNRMESS LESISAIAFK EAGEKRQGTG NGCRLFGIQL LENSNAEGSL  480
QTVSLSGRLG DDRFIPSLDV ESDQHSEPSN ANRSDIPSVS CDAEKSCLSP QELQSKQIRS  540
CTKVHMQGMA VGRAVDLTRF CGYEDLLIKL EEIEFCSVVR KIFIYTTEEV KKLSPKIGLQ  600
VNEKLKSNKQ DWEEIFNPEE QSSNVGPSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.053452354Auxin response factor 1
4ldw_A0.053452354Auxin response factor 1
4ldw_B0.053452354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g27330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014509361.10.0auxin response factor 1
RefseqXP_014509362.10.0auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A1S3UTR40.0A0A1S3UTR4_VIGRR; Auxin response factor
STRINGGLYMA07G40270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68022638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]