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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vradi07g26570.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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| Family |
GRAS |
| Protein Properties |
Length: 553aa MW: 61444.9 Da PI: 6.0745 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi07g26570.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 399 | 4.9e-122 | 184 | 552 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLa.rlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96
+L cA+avs++d a + l +++s +gdp+qRl ay++e+L+arl +s++ +yk+l++++ + s+e +++++++++++P+ kf+++
Vradi07g26570.1 184 VLRVCAQAVSDEDVPTAIGWMDnVLGKMVSVSGDPIQRLGAYLLEGLRARLESSGHLIYKSLKCEQPT---SKELMSYMHILYQICPYWKFAYI 274
6788**********98888876157899***************************************9...99999****************** PP
GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
aN I ea+++e+r+Hi Df+i qG+QW L++aLa+Rp+gppslR+Tgv++++s + +e +gerL++fA+++gvpfef+ +a + +
Vradi07g26570.1 275 SANAIITEAMANESRIHIMDFQIAQGTQWYLLIKALANRPGGPPSLRVTGVDDSHSIeaRGGGIEIVGERLSEFARSCGVPFEFQS-AAMSGCE 367
*****************************************************7777889999***********************.6667777 PP
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
+ + +++ gEalaVn+ + lh++ desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F+ rfle+l+yysa+f+s+++ pr++e+r
Vradi07g26570.1 368 VVRGSVEIRGGEALAVNFPFVLHHMADESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFYRFLETLDYYSAMFESIDVACPRDDEKR 461
77999***************************************************************************************** PP
GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
++ E+++++r+ivn++acegaer+erhe l+kWr+rl++aGFk+ +ls+++ + ll+ ++++ yr+++++++l+lgW++r + + SaWr
Vradi07g26570.1 462 VSAEQHCVARDIVNMIACEGAERVERHELLGKWRSRLSMAGFKQCELSSSVIVATQNLLNDFSQN-YRLQHKDDALYLGWMNRHMATSSAWR 552
***************************************************************66.*************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 553 aa
Download sequence Send
to blast |
MQTSQKHPTS AGVHFYHHQP VQGMYHVLQS DLCHDARHSS SSSSQGTRVS FESCKEQYFT 60
LESCPAPTTG FMEGDDSPSY ASVSSKRSPF SPQGSHSCYS DHHQSSDNTY GSPISGLSSV 120
DDGHELKHKL RELEISLLGP DESDIEDSFG CCVKGSRPDG ASQLGKHNWE QIAENISQFD 180
LKGVLRVCAQ AVSDEDVPTA IGWMDNVLGK MVSVSGDPIQ RLGAYLLEGL RARLESSGHL 240
IYKSLKCEQP TSKELMSYMH ILYQICPYWK FAYISANAII TEAMANESRI HIMDFQIAQG 300
TQWYLLIKAL ANRPGGPPSL RVTGVDDSHS IEARGGGIEI VGERLSEFAR SCGVPFEFQS 360
AAMSGCEVVR GSVEIRGGEA LAVNFPFVLH HMADESVSTE NHRDRLLRLV KSLSPKVVTL 420
VEQESNTNTS PFFYRFLETL DYYSAMFESI DVACPRDDEK RVSAEQHCVA RDIVNMIACE 480
GAERVERHEL LGKWRSRLSM AGFKQCELSS SVIVATQNLL NDFSQNYRLQ HKDDALYLGW 540
MNRHMATSSA WR*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5b3g_A | 2e-53 | 188 | 551 | 26 | 378 | Protein SCARECROW |
| 5b3h_A | 2e-53 | 188 | 551 | 25 | 377 | Protein SCARECROW |
| 5b3h_D | 2e-53 | 188 | 551 | 25 | 377 | Protein SCARECROW |
| 5hyz_A | 1e-53 | 215 | 552 | 36 | 375 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
