PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g24840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 130aa    MW: 14617.7 Da    PI: 10.9424
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g24840.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000212345123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C +C + F+++  L  H++ H
  Vradi07g24840.1 23 FHCRYCRRQFTNSQALGGHQNAH 45
                     78******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.7E-6949IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.21E-71950No hitNo description
PROSITE profilePS5015711.4682350IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MKLFGFTFNL KAAIAREDGP KRFHCRYCRR QFTNSQALGG HQNAHRRERA KLAQFKYLLN  60
LRQQHGHRFK EPYNNVPKGC LVPHPNASPN VSVGSATSAA LFQFHGAGTL LLQVPARDHD  120
VDVDLNLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g24840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-178AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506738.16e-92zinc finger protein 6-like
TrEMBLA0A1S3UL201e-90A0A1S3UL20_VIGRR; zinc finger protein 6-like
STRINGXP_007154344.15e-65(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.11e-11C2H2 family protein