PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi07g24170.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SBP

Protein Properties

Length: 932aa MW: 103273 Da PI: 7.9765

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g24170.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.3	1.4e-40	85	162	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adl +ak+yhrrhkvC+vhska+v+lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Vradi07g24170.1 85 VCQVQDCTADLGNAKDYHRRHKVCDVHSKATVALVGDVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 162 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.0E-31	79	147	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.624	83	160	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.09E-37	84	165	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.6E-29	86	159	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	1.7E-7	201	226	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.66E-7	662	818	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.7E-7	707	817	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.51E-7	708	817	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 932 aa Download sequence Send to blast
MCFFRWVCKL DVVAKREGKK ELEKRRRRVI GEGEGEGMND EGGSLSLNLG GHGYPFMVEG 60 EEKGGKKTKV IGTTTASATT SNRAVCQVQD CTADLGNAKD YHRRHKVCDV HSKATVALVG 120 DVMQRFCQQC SRFHVLQEFD EGKRSCRRRL AGHNRRRRKT HPDVTVVNEG SHNSGRGSSY 180 LLMSLLRILT NLHTNGSDHT RNQDILSHLL RNLASLAAPN NDRTLASLLE NSKGLLNDGT 240 SGGAHDEPNL HSNTPEASRP SGSSLQIDNG FISQDPPISM AQCETRPTNG GVENLRPPSG 300 APFSSISQSK GNLPCQLTAT ETTLRRNNLN NVDLNNVYSD VQNTDENHKK PYPHVASEVG 360 SSDLPSWLQC ASLKSSGEAK SCTDRIVFKL FGKNPSNFPL LLRSQILNWL SHSPTEIESY 420 IRPGCIILTI YLCLEKSAWE ELCCNLGSSL RKLLSSSNDT FWRTGWVFAR VQHSVAFLYN 480 GQVVLDVPLC LKSSHHCTIS CIKPLAVPAS ARAHFIVKGC NLSQSSTRLL CALEGKYVVH 540 ASCHDLIGED EESIQHLNFS CHIPDVTGRG FIEVEDHCLR SCSFPFIVAE KEVCSEICKL 600 ENVIEAAETT NDFQIKNQQM EEKAQALNFL QEMGWLLHRS RMKVRLGPMA PIHDLFQFNR 660 FTWLVDFSMD HGWCAVMKKL LDIIFDGGVD TGEQASIELA LLDLSLLHKA VKRNNRPMVE 720 LLLRFVPVKT SDGADSEVKQ VEKASDRFLF RPDTVGPAGL TPLHVAATMR GSENVLDALT 780 DDPGMVGIEV WKSARDSAGL TPNDYACLRG YYSYVQLVER KTKKKGERLH VVDIPGTVAD 840 SGIRKQKQSG KVSSLQTEKI ETTEMGSNCR VCQQKLVYGG IRTGVVYRPV LLSMVAIAAV 900 CVCVALLFKS SPRVYYVFQP FNWESLEYGT I*

Sequence ? help Back to Top

Protein Sequence Length: 932 aa Download sequence Send to blast

MCFFRWVCKL DVVAKREGKK ELEKRRRRVI GEGEGEGMND EGGSLSLNLG GHGYPFMVEG  60
EEKGGKKTKV IGTTTASATT SNRAVCQVQD CTADLGNAKD YHRRHKVCDV HSKATVALVG  120
DVMQRFCQQC SRFHVLQEFD EGKRSCRRRL AGHNRRRRKT HPDVTVVNEG SHNSGRGSSY  180
LLMSLLRILT NLHTNGSDHT RNQDILSHLL RNLASLAAPN NDRTLASLLE NSKGLLNDGT  240
SGGAHDEPNL HSNTPEASRP SGSSLQIDNG FISQDPPISM AQCETRPTNG GVENLRPPSG  300
APFSSISQSK GNLPCQLTAT ETTLRRNNLN NVDLNNVYSD VQNTDENHKK PYPHVASEVG  360
SSDLPSWLQC ASLKSSGEAK SCTDRIVFKL FGKNPSNFPL LLRSQILNWL SHSPTEIESY  420
IRPGCIILTI YLCLEKSAWE ELCCNLGSSL RKLLSSSNDT FWRTGWVFAR VQHSVAFLYN  480
GQVVLDVPLC LKSSHHCTIS CIKPLAVPAS ARAHFIVKGC NLSQSSTRLL CALEGKYVVH  540
ASCHDLIGED EESIQHLNFS CHIPDVTGRG FIEVEDHCLR SCSFPFIVAE KEVCSEICKL  600
ENVIEAAETT NDFQIKNQQM EEKAQALNFL QEMGWLLHRS RMKVRLGPMA PIHDLFQFNR  660
FTWLVDFSMD HGWCAVMKKL LDIIFDGGVD TGEQASIELA LLDLSLLHKA VKRNNRPMVE  720
LLLRFVPVKT SDGADSEVKQ VEKASDRFLF RPDTVGPAGL TPLHVAATMR GSENVLDALT  780
DDPGMVGIEV WKSARDSAGL TPNDYACLRG YYSYVQLVER KTKKKGERLH VVDIPGTVAD  840
SGIRKQKQSG KVSSLQTEKI ETTEMGSNCR VCQQKLVYGG IRTGVVYRPV LLSMVAIAAV  900
CVCVALLFKS SPRVYYVFQP FNWESLEYGT I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	76	159	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	28	KRRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g24170.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014506940.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_022639731.1	0.0	squamosa promoter-binding-like protein 1
TrEMBL	A0A1S3ULS2	0.0	A0A1S3ULS2_VIGRR; squamosa promoter-binding-like protein 1
STRING	XP_007154455.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1