PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g21950.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CO-like
Protein Properties Length: 373aa    MW: 40396.3 Da    PI: 6.497
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g21950.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.2e-062060438
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     + C+ ++   + lfC+ ++ +lC  C +++H        H+
  Vradi07g21950.1 20 KPCDSCKLASAALFCRPDSAFLCIACDSKIHCAnklasrHE 60
                     68******99********************95545666665 PP
2zf-B_box26.21.7e-0862107342
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       ++C+ +e+ ++   C+ +   lC +C + +H+       H++vp+
  Vradi07g21950.1  62 VWMCEVCEQAPAAVTCKADAAALCITCDSDIHSAnplarrHDRVPV 107
                      689*****************************66899999999986 PP
3CCT69.68.2e-24300344145
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                      Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ae
  Vradi07g21950.1 300 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRAE 344
                      9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.4E-101764IPR000315B-box-type zinc finger
PROSITE profilePS501199.9971764IPR000315B-box-type zinc finger
PfamPF006433.3E-51961IPR000315B-box-type zinc finger
CDDcd000212.41E-72164No hitNo description
PROSITE profilePS5011910.69460107IPR000315B-box-type zinc finger
PfamPF006433.0E-662107IPR000315B-box-type zinc finger
CDDcd000212.61E-863107No hitNo description
SMARTSM003363.8E-865107IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787300342IPR010402CCT domain
PfamPF062037.2E-18300342IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGIERGGLKG FRTGWTVPPK PCDSCKLASA ALFCRPDSAF LCIACDSKIH CANKLASRHE  60
RVWMCEVCEQ APAAVTCKAD AAALCITCDS DIHSANPLAR RHDRVPVEPF FDSADSIVKA  120
SAAASFGFIV PSDDATAASD VFAPDDPDAA AWLIPNPNFG SKFMDAPDIK SKEIFYSEMD  180
PFLDFDYSNS FHNNSSGNDS VVPVQTKPSL APSLINNHQQ SESCFDIDFC RTKLSSFNYP  240
SQSLSQSVSS SSLDVGVVPD GNTVSEMSYS FGRNSSESSG IGLSGVSGGQ GATQLCGMDR  300
EARVLRYREK RKNRKFEKTI RYASRKAYAE TRPRIKGRFA KRAEIDSDVE RLYSPGAASL  360
MLDSPYGVVP SF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g21950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510275.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-121COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A1S3UW610.0A0A1S3UW61_VIGRR; zinc finger protein CONSTANS-LIKE 5
STRINGXP_007154800.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-109CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]