PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g21630.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 385aa    MW: 43661.6 Da    PI: 4.8839
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g21630.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.5e-16168219155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Vradi07g21630.1 168 SKYRGVARHHHNGRWEARIGKvF---G-NKYLYLGTYATQEEAATAYDLAAIEYRG 219
                      89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.82263133IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-699135IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-6105134IPR001471AP2/ERF domain
CDDcd000189.53E-25168229No hitNo description
PfamPF008471.5E-12168219IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18168229IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-17169228IPR001471AP2/ERF domain
SMARTSM003804.8E-25169233IPR001471AP2/ERF domain
PROSITE profilePS5103218.386169227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MVQPFPWPKD HTHSFEPRKT MQPTLPIILM QPTLSPPRSN EQGEVSPETP LLNAAPYTEE  60
SLGTDGLVAT KLIYGTSIAG MKHRTKKDDK VSCSFNTYNY ISICAYDNEV AAAHAYDLAA  120
LKYWGQDTIL NFPLSNYLNE LKEMEGQSRE EYIGSLRRKS SGFSRGISKY RGVARHHHNG  180
RWEARIGKVF GNKYLYLGTY ATQEEAATAY DLAAIEYRGL NAVTNFDLSR YIKWLKPNNN  240
TNNNDQISIN LSDMNNNCTS SSLTPNPDQE QEQELSFLHN QDSLNTVVEE ATSVTHQPRA  300
AGATSALELL LQSSKFKEMM EMTSVANMST QMESELPQCA FPDHIQTYFE YEDSNRYEEV  360
DDLMFKFNEF SSIVPFYHCD EFQS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g21630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022638686.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-64AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A3Q0F5A00.0A0A3Q0F5A0_VIGRR; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_007154853.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.24e-59ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]