PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g19460.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 230aa    MW: 25496.5 Da    PI: 8.1047
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g19460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.15.1e-32134190158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep++VNaKQy++Il+RRq+Rak+e+e+k  +++rkpylheSRh hAlrRpRg+gGrF
  Vradi07g19460.1 134 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IRNRKPYLHESRHMHALRRPRGCGGRF 190
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.2E-36132193IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.942133193IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.6E-27135190IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.9E-24136158IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860138158IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.9E-24167190IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTQLRSGVCV PFMIAVFCIL IVSHALENTL LDNEDEGQHQ SESQVQSPSA NGISDSAIRT  60
QNVNVQYATP GQLGAGHAMV PPVYPYPDPY YRSIFAPYDT QPYPPQAYGG QPMVHLQLMG  120
IQQAGVPLPT DAVEEPVFVN AKQYHGILRR RQSRAKAESE NKAIRNRKPY LHESRHMHAL  180
RRPRGCGGRF LNSKKEENQH NDVASADKSQ SNINLNSDKN DQTSSDRTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-21133200168NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g19460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0894150.0BT089415.1 Soybean clone JCVI-FLGm-1L22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022639449.11e-171nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_022639450.11e-171nuclear transcription factor Y subunit A-7 isoform X1
SwissprotQ84JP12e-68NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A3Q0FA031e-170A0A3Q0FA03_VIGRR; nuclear transcription factor Y subunit A-7 isoform X1
STRINGXP_007159545.11e-129(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.28e-58nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]