PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g19440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HB-other | ||||||||
Protein Properties | Length: 198aa MW: 22885.9 Da PI: 9.378 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56 | 6.9e-18 | 107 | 159 | 4 | 52 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrR 52 ++t+eq+e+Le++++++++ps ++r++L + + +++++q+kvWFqNrR Vradi07g19440.1 107 YVRYTPEQVEALERVYAECPKPSSSRRQQLIRDCpilsNIEQKQIKVWFQNRR 159 6789************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 3.3E-11 | 103 | 169 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.48E-14 | 106 | 159 | No hit | No description |
SuperFamily | SSF46689 | 1.97E-14 | 106 | 160 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-15 | 107 | 159 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-16 | 109 | 159 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.556 | 109 | 165 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MKTKHWPKKE KSQNSRKEIK EKEERKKKGN HGYDTRTVRS GMGYGTHGYD TRTNGRAWLA 60 VDNLNGRTWE QHLMKECGGS LGEEGKEEED FKKRDSVLNR LMDCGKYVRY TPEQVEALER 120 VYAECPKPSS SRRQQLIRDC PILSNIEQKQ IKVWFQNRRP SHDVSVEGAL TECSNDHLAL 180 VLVLVMDKAK ESDSRFL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g19440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-100 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 3e-31 | HD-ZIP family protein |