PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g19290.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 419aa    MW: 47735.4 Da    PI: 6.6694
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g19290.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006179101323
                      ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                      C+   Cgk+F +   L++H   H
  Vradi07g19290.1  79 CSydGCGKTFIDAGALRKHSHIH 101
                      78889**************7766 PP
2zf-C2H221.56.2e-07182206123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++Cp   Cgk Fs   nL++H++tH
  Vradi07g19290.1 182 FVCPheGCGKAFSLDFNLRSHMKTH 206
                      89**********************9 PP
3zf-C2H217.61.1e-05212236123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  dCgk++ + + Lk+Hi +H
  Vradi07g19290.1 212 HICPypDCGKRYAHEYKLKNHIASH 236
                      679999*****************96 PP
4zf-C2H212.40.00047276301123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      y Cp   C k + + + L+ H+++ H
  Vradi07g19290.1 276 YACPydGCEKAYIHEYKLRLHLKReH 301
                      89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-1372103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.68E-672113No hitNo description
SMARTSM003550.002877101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78377106IPR007087Zinc finger, C2H2
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.0E-5104116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-14163216No hitNo description
Gene3DG3DSA:3.30.160.606.4E-20166208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.695182211IPR007087Zinc finger, C2H2
SMARTSM003553.1E-4182206IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280184206IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-8209236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.473212241IPR007087Zinc finger, C2H2
SMARTSM003550.0028212236IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280214237IPR007087Zinc finger, C2H2
SuperFamilySSF576672.13E-5271299No hitNo description
Gene3DG3DSA:3.30.160.607.3E-9272298IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.554276306IPR007087Zinc finger, C2H2
SMARTSM003550.009276301IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280278301IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MEIHYSSSYF ERRPILKSKA PAVKWVKEWV PQDLVTTGGK CMLLKWVTED TLKTLKEKTT  60
EPTMPEPEPE PTTEVLFLCS YDGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKTQIQF  120
YFVLPFSCPM VGRKSFSAKH CVECSGAEKT LISSTILFTL QKFLDSSKLK RHFLIHTGER  180
DFVCPHEGCG KAFSLDFNLR SHMKTHSQEN YHICPYPDCG KRYAHEYKLK NHIASHHEKN  240
ASVDVTKYTT PPSEKQTKTA KSSGGAYGSA SSDRPYACPY DGCEKAYIHE YKLRLHLKRE  300
HPGLMPDENA EHAQANNVDN EMDEASDQDA YITKRSNGKI QKQSRPKPSL KLPPSKIAKR  360
KVSTPTITVN KNSWPVKDEP FDEEDSEETE EDRDNVEDGW RYTGGNNEDD DEETEYED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-26702362117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g19290.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0993870.0BT099387.1 Soybean clone JCVI-FLGm-23J16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505982.10.0zinc finger transcription factor YY1
SwissprotQ2V3L31e-146YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A1S3UIW50.0A0A1S3UIW5_VIGRR; zinc finger transcription factor YY1
STRINGXP_007159566.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56493354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-126C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]