PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi07g18320.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LSD

Protein Properties

Length: 101aa MW: 10763.7 Da PI: 8.7217

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g18320.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	44.2	3.1e-14	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL YPrGA++V+CalC+t+ Vradi07g18320.1 7 CNGCRSLLLYPRGATNVCCALCNTI 31 ***********************97 PP
2	zf-LSD1	50.9	2.5e-16	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV Vradi07g18320.1 46 CGGCRTLLMYTRGATSVRCSCCHTV 70 ************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	3.4E-13	4	34	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.4E-12	7	31	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.4E-18	43	73	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-13	46	70	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MQSQLVCNGC RSLLLYPRGA TNVCCALCNT ITSVPPPGMD MSQLYCGGCR TLLMYTRGAT 60 SVRCSCCHTV NLVPEYRVLP KRSGVSQVSN VVVGVTTDKK *

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269\|PubMed:12732715}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g18320.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096707	2e-87	BT096707.1 Soybean clone JCVI-FLGm-21G1 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014510000.1	4e-47	protein LSD1
Swissprot	Q93ZB1	1e-35	LOL1_ARATH; Protein LOL1
TrEMBL	A0A1S3UVE3	1e-45	A0A1S3UVE3_VIGRR; protein LSD1
STRING	XP_007159613.1	8e-46	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4027	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	2e-38	lsd one like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]